利用来自韩国的三种类型的紫苏作物中的 SSR 标记进行形态农艺性状和叶片芳香化合物的关联作图分析(AMA)。

Association mapping analysis (AMA) for morpho-agronomic traits and leaf aromatic compounds using SSR markers in three types of Perilla crop collected from South Korea.

机构信息

Department of Applied Plant Sciences, College of Agriculture and Life Sciences, Kangwon National University, Chuncheon, 24341, Korea.

Interdisciplinary Program in Smart Agriculture, Kangwon National University, Chuncheon, 24341, Korea.

出版信息

Genes Genomics. 2024 Dec;46(12):1399-1413. doi: 10.1007/s13258-024-01567-x. Epub 2024 Sep 18.

Abstract

BACKGROUND

Perilla is a representative leafy vegetable in South Korea. As K-Food (Korean food) is in the spotlight around the world, there is also increasing interest in Western countries in Perilla crop, an annual plant belonging to the Lamiaceae family.

OBJECTIVE

To discover comprehensive information, including genetic and phylogenetic relationships among the 80 native Perilla accessions, using three types of data: simple sequence repeat (SSR) marker data, volatiles profile data, and morpho-agronomic data.

METHODS

This study conducted genotypic and phenotypic analyses on 80 Perilla accessions of three types (cultivated var. frutescens, weedy var. frutescens, weedy var. crispa) from South Korea. Five groups (G1-G5) of the 80 Perilla accessions of the three types were differentiated into two different clusters [genotype-based clustering (GTC) and phenotype-based clustering (PTC)] based on an aroma sensory phenotypic test.

RESULTS

A total of 314 alleles were confirmed using 55 Perilla SSR primer sets, and genetic variation in the 80 Perilla accessions was evaluated. Among the three statistical analysis methods, principal coordinate analysis (PCoA) and GTC using data of the 55 Perilla SSR markers revealed perfectly consistent results, whereas PTC produced a total of six clusters. The 10 Perilla SSR markers associated with and significantly correlated with both biochemical and morphological characteristics were selected.

CONCLUSIONS

These findings are expected to provide valuable information for developing global South Korean Perilla cultivars for further studies in Perilla crop breeding programs.

摘要

背景

紫苏是韩国的一种代表性叶菜。随着 K-Food(韩国食品)在全球范围内受到关注,来自唇形科一年生植物的紫苏作物也在西方国家引起了越来越多的兴趣。

目的

利用简单重复序列(SSR)标记数据、挥发物图谱数据和形态农艺学数据这三种类型的数据,发现 80 种原产紫苏资源间的综合信息,包括遗传和系统发育关系。

方法

本研究对来自韩国的三种紫苏类型(栽培种皱叶紫苏、野生种皱叶紫苏、野生种圆叶紫苏)的 80 个紫苏资源进行了基因型和表型分析。基于香气感官表型试验,将 80 种紫苏资源分为 5 组(G1-G5),其中三种类型(栽培种皱叶紫苏、野生种皱叶紫苏、野生种圆叶紫苏)各有两组。

结果

利用 55 对紫苏 SSR 引物共鉴定到 314 个等位基因,评估了 80 个紫苏资源的遗传变异。在三种统计分析方法中,主坐标分析(PCoA)和基于 55 对 SSR 标记数据的 GTC 结果完全一致,而 PTC 则产生了 6 个聚类。共选择了 10 对与生化和形态特征显著相关的 SSR 标记。

结论

这些发现有望为开发全球韩国紫苏品种提供有价值的信息,以进一步开展紫苏作物的育种计划研究。

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