DNA和蛋白质序列的比较统计：多序列分析
Comparative statistics for DNA and protein sequences: multiple sequence analysis.
作者信息
Karlin S, Ghandour G
出版信息
Proc Natl Acad Sci U S A. 1985 Sep;82(18):6186-90. doi: 10.1073/pnas.82.18.6186.
Abstract
Concepts and methods [Karlin, S. & Ghandour, G. (1985) Proc. Natl. Acad. Sci. USA 82, 5800-5804] for the analysis of patterns and relationships are extended to multiple DNA and protein sequences. Functionals include multiple sequence common word occurrence distributions, characterizations of high frequency shared words, and ascertainment of long block identities. Various comparisons of sequences using natural alphabets obtained from grouping nucleotides or amino acids by their chemical and functional characteristics are described. Specific applications are given to globin genes, mitochondrial genomes, and a variety of mammalian viruses.
摘要
用于分析模式和关系的概念与方法[卡林，S. 及甘杜尔，G.（1985年）《美国国家科学院院刊》82卷，5800 - 5804页]被扩展至多个DNA和蛋白质序列。泛函包括多个序列的常见词出现分布、高频共享词的特征描述以及长片段同一性的确证。描述了使用通过根据核苷酸或氨基酸的化学和功能特征进行分组而获得的自然字母表对序列进行的各种比较。给出了针对珠蛋白基因、线粒体基因组以及多种哺乳动物病毒的具体应用。
相似文献
1
Comparative statistics for DNA and protein sequences: multiple sequence analysis.DNA和蛋白质序列的比较统计：多序列分析
Proc Natl Acad Sci U S A. 1985 Sep;82(18):6186-90. doi: 10.1073/pnas.82.18.6186.
2
Comparative statistics for DNA and protein sequences: single sequence analysis.DNA和蛋白质序列的比较统计：单序列分析
Proc Natl Acad Sci U S A. 1985 Sep;82(17):5800-4. doi: 10.1073/pnas.82.17.5800.
3
DNA sequence comparisons of the human, mouse, and rabbit immunoglobulin kappa gene.人类、小鼠和兔免疫球蛋白κ基因的DNA序列比较。
Mol Biol Evol. 1985 Jan;2(1):35-52. doi: 10.1093/oxfordjournals.molbev.a040336.
4
The use of multiple alphabets in kappa-gene immunoglobulin DNA sequence comparisons.κ基因免疫球蛋白DNA序列比较中多个字母表的使用
EMBO J. 1985 May;4(5):1217-23. doi: 10.1002/j.1460-2075.1985.tb03763.x.
5
A representation of DNA primary sequences by random walk.通过随机游走对DNA一级序列的一种表示。
Math Biosci. 2007 Sep;209(1):282-91. doi: 10.1016/j.mbs.2006.06.004. Epub 2006 Jun 30.
6
Multiple-alphabet amino acid sequence comparisons of the immunoglobulin kappa-chain constant domain.免疫球蛋白κ链恒定区的多字母氨基酸序列比较。
Proc Natl Acad Sci U S A. 1985 Dec;82(24):8597-601. doi: 10.1073/pnas.82.24.8597.
7
Efficient algorithms for molecular sequence analysis.用于分子序列分析的高效算法。
Proc Natl Acad Sci U S A. 1988 Feb;85(3):841-5. doi: 10.1073/pnas.85.3.841.
8
Intracisternal A-particle genes as movable elements in the mouse genome.脑池内A颗粒基因作为小鼠基因组中的可移动元件。
Proc Natl Acad Sci U S A. 1983 Apr;80(7):1992-6. doi: 10.1073/pnas.80.7.1992.
9
Variable region genes for the immunoglobulin framework are assembled from small segments of DNA--a hypothesis.免疫球蛋白框架的可变区基因是由小段DNA组装而成的——一种假说。
Proc Natl Acad Sci U S A. 1978 May;75(5):2429-33. doi: 10.1073/pnas.75.5.2429.
10
Comparative nucleotide sequence analysis of two types of larval beta-globin mRNAs of Xenopus laevis.非洲爪蟾两种幼虫β-珠蛋白mRNA的比较核苷酸序列分析。
Nucleic Acids Res. 1985 Nov 11;13(21):7899-908. doi: 10.1093/nar/13.21.7899.
引用本文的文献
1
Trajectory Modelling Techniques Useful to Epidemiological Research: A Comparative Narrative Review of Approaches.对流行病学研究有用的轨迹建模技术：方法的比较叙述性综述
Clin Epidemiol. 2020 Oct 30;12:1205-1222. doi: 10.2147/CLEP.S265287. eCollection 2020.
2
Support vector machine (SVM) based multiclass prediction with basic statistical analysis of plasminogen activators.基于支持向量机（SVM）的多类预测及纤溶酶原激活剂的基本统计分析
BMC Res Notes. 2014 Jan 27;7:63. doi: 10.1186/1756-0500-7-63.
3
Molecular immunity to mycobacteria: knowledge from the mutation and phenotype spectrum analysis of Mendelian susceptibility to mycobacterial diseases.对分枝杆菌的分子免疫：孟德尔对分枝杆菌病易感性的突变和表型谱分析的知识。
Int J Infect Dis. 2011 May;15(5):e305-13. doi: 10.1016/j.ijid.2011.01.004. Epub 2011 Feb 16.
4
CLUSS: clustering of protein sequences based on a new similarity measure.CLUSS：基于一种新的相似性度量对蛋白质序列进行聚类。
BMC Bioinformatics. 2007 Aug 4;8:286. doi: 10.1186/1471-2105-8-286.
5
Multiple-alphabet amino acid sequence comparisons of the immunoglobulin kappa-chain constant domain.免疫球蛋白κ链恒定区的多字母氨基酸序列比较。
Proc Natl Acad Sci U S A. 1985 Dec;82(24):8597-601. doi: 10.1073/pnas.82.24.8597.
本文引用的文献
1
The structure and evolution of the human beta-globin gene family.人类β-珠蛋白基因家族的结构与进化
Cell. 1980 Oct;21(3):653-68. doi: 10.1016/0092-8674(80)90429-8.
2
Cloned human and mouse kappa immunoglobulin constant and J region genes conserve homology in functional segments.克隆的人类和小鼠κ免疫球蛋白恒定区和J区基因在功能片段上保持同源性。
Cell. 1980 Nov;22(1 Pt 1):197-207. doi: 10.1016/0092-8674(80)90168-3.
3
An immunoglobulin heavy chain variable region gene is generated from three segments of DNA: VH, D and JH.免疫球蛋白重链可变区基因由三段DNA片段组成：VH、D和JH。
Cell. 1980 Apr;19(4):981-92. doi: 10.1016/0092-8674(80)90089-6.
4
Comparison of the beta-like globin gene families of rabbits and humans indicates that the gene cluster 5'-epsilon-gamma-delta-beta-3' predates the mammalian radiation.兔子和人类的β样珠蛋白基因家族比较表明，基因簇5'-ε-γ-δ-β-3'早于哺乳动物的辐射出现。
Mol Biol Evol. 1984 Sep;1(5):390-410. doi: 10.1093/oxfordjournals.molbev.a040326.
5
Rabbit globin pseudogene psi beta 2 is a hybrid of delta- and beta-globin gene sequences.兔珠蛋白假基因psi beta 2是δ-珠蛋白和β-珠蛋白基因序列的杂交体。
Mol Biol Evol. 1984 Jul;1(4):302-16. doi: 10.1093/oxfordjournals.molbev.a040321.
6
Comparative analysis of human and bovine papillomaviruses.
Mol Biol Evol. 1984 Jul;1(4):357-70. doi: 10.1093/oxfordjournals.molbev.a040318.
7
Repeating sequences and gene duplication in proteins.蛋白质中的重复序列和基因复制
J Mol Biol. 1972 Mar 14;64(2):417-37. doi: 10.1016/0022-2836(72)90508-6.
8
An evaluation of the relatedness of proteins based on comparison of amino acid sequences.基于氨基酸序列比较对蛋白质相关性的评估。
J Mol Biol. 1970 Jun 28;50(3):617-39. doi: 10.1016/0022-2836(70)90089-6.
9
Alignment maps and homology analysis of the J-C intron in human, mouse, and rabbit immunoglobulin kappa gene.人、小鼠和兔免疫球蛋白κ基因中J-C内含子的比对图谱及同源性分析
Mol Biol Evol. 1985 Jan;2(1):53-65. doi: 10.1093/oxfordjournals.molbev.a040337.
10
DNA sequence comparisons of the human, mouse, and rabbit immunoglobulin kappa gene.人类、小鼠和兔免疫球蛋白κ基因的DNA序列比较。
Mol Biol Evol. 1985 Jan;2(1):35-52. doi: 10.1093/oxfordjournals.molbev.a040336.
Zotero 插件