从一名尿路感染患者中分离出的对头孢菌素和四环素耐药的CF51菌株的全基因组序列。
Complete genome sequence of cephalosporin and tetracycline-resistant CF51 isolate from a patient with urinary tract infection.
作者信息
Sung Kidon, Nawaz Mohamed, Revollo Javier, Miranda Jaime A, Feye Kristina, Park Miseon, Khan Saeed A
机构信息
Division of Microbiology, National Center for Toxicological Research (NCTR), U.S. Food and Drug Administration, Jefferson, Arkansas, USA.
Division of Molecular and Genetic Toxicology, NCTR, U.S. Food and Drug Administration, Jefferson, Arkansas, USA.
出版信息
Microbiol Resour Announc. 2024 Oct 10;13(10):e0032524. doi: 10.1128/mra.00325-24. Epub 2024 Sep 19.
Abstract
We report here the complete genome sequence of cephalosporin (cefazolin and cephalotin) and tetracycline-resistant strain CF51, isolated from a patient with a urinary tract infection. The genome comprises a 5.0-Mb chromosome, along with an 87.2-kb plasmid and a 23.9-kb plasmid.
摘要
我们在此报告从一名尿路感染患者中分离出的对头孢菌素（头孢唑林和头孢噻吩）和四环素耐药的菌株CF51的全基因组序列。该基因组由一条5.0兆碱基的染色体、一个87.2千碱基的质粒和一个23.9千碱基的质粒组成。
相似文献
1
Complete genome sequence of cephalosporin and tetracycline-resistant CF51 isolate from a patient with urinary tract infection.
Microbiol Resour Announc. 2024 Oct 10;13(10):e0032524. doi: 10.1128/mra.00325-24. Epub 2024 Sep 19.
2
Genetic characterisation of a complex class 1 integron in an NDM-1-producing Citrobacter freundii ST396 clinical strain isolated from a urine sample.
J Glob Antimicrob Resist. 2020 Dec;23:64-66. doi: 10.1016/j.jgar.2020.08.002. Epub 2020 Aug 18.
3
Whole Genome Sequencing of a Strain Isolated from the Hospital Environment: An Extremely Multiresistant NDM-1 and VIM-48 Coproducing Isolate.
Microb Drug Resist. 2022 Jan;28(1):18-22. doi: 10.1089/mdr.2020.0417. Epub 2021 Aug 4.
4
Complete Genome Sequence of Multidrug-Resistant Citrobacter freundii Strain P10159, Isolated from Urine Samples from a Patient with Esophageal Carcinoma.
Genome Announc. 2016 Feb 18;4(1):e01754-15. doi: 10.1128/genomeA.01754-15.
5
Complete-Genome Sequencing and Comparative Genomic Characterization of an IMP-4 Producing Isolate from Patient with Diarrhea.
Infect Drug Resist. 2020 Apr 14;13:1057-1065. doi: 10.2147/IDR.S244683. eCollection 2020.
6
Genomic characterization of a carbapenem-resistant Citrobacter freundii clinical isolate from China carrying bla on a novel IncC-IncFIB-IncX3 plasmid.
J Glob Antimicrob Resist. 2024 Mar;36:485-488. doi: 10.1016/j.jgar.2023.10.024. Epub 2023 Nov 24.
7
Complete-genome sequencing and comparative genomic characterization of bla carrying Citrobacter freundii isolates from a patient with multiple infections.
BMC Genomics. 2023 Aug 30;24(1):506. doi: 10.1186/s12864-023-09579-9.
8
Finished Genome Sequence of the Highly Multidrug-Resistant Human Urine Isolate Citrobacter freundii Strain SL151.
Genome Announc. 2016 Nov 3;4(6):e01225-16. doi: 10.1128/genomeA.01225-16.
9
In Vitro Susceptibility and Florfenicol Resistance in Isolates and Whole-Genome Analysis of Multidrug-Resistant .
Int J Genomics. 2019 Nov 19;2019:7191935. doi: 10.1155/2019/7191935. eCollection 2019.
10
Use of WGS data for investigation of a long-term NDM-1-producing Citrobacter freundii outbreak and secondary in vivo spread of blaNDM-1 to Escherichia coli, Klebsiella pneumoniae and Klebsiella oxytoca.
J Antimicrob Chemother. 2016 Nov;71(11):3117-3124. doi: 10.1093/jac/dkw289. Epub 2016 Aug 1.
本文引用的文献
1
Polypolish: Short-read polishing of long-read bacterial genome assemblies.
PLoS Comput Biol. 2022 Jan 24;18(1):e1009802. doi: 10.1371/journal.pcbi.1009802. eCollection 2022 Jan.
2
Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification.
Microb Genom. 2021 Nov;7(11). doi: 10.1099/mgen.0.000685.
3
Global evolutionary epidemiology and resistome dynamics of Citrobacter species, Enterobacter hormaechei, Klebsiella variicola, and Proteeae clones.
Environ Microbiol. 2021 Dec;23(12):7412-7431. doi: 10.1111/1462-2920.15387. Epub 2021 Jan 20.
4
Antimicrobial Resistance and Cytotoxicity of spp. in Maanshan Anhui Province, China.
Front Microbiol. 2017 Jul 20;8:1357. doi: 10.3389/fmicb.2017.01357. eCollection 2017.
5
Citrobacter freundii bacteremia: Risk factors of mortality and prevalence of resistance genes.
J Microbiol Immunol Infect. 2018 Aug;51(4):565-572. doi: 10.1016/j.jmii.2016.08.016. Epub 2017 Jun 22.
6
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
7
QUAST: quality assessment tool for genome assemblies.
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
Zotero 插件