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设计、合成及一些新型苯并[d]噻唑类化合物的分子动力学模拟对抗铜绿假单胞菌的抗毒活性。

Design, synthesis, and molecular dynamic simulations of some novel benzo[d]thiazoles with anti-virulence activity against Pseudomonas aeruginosa.

机构信息

Pharmaceutical Chemistry Department, Faculty of Pharmacy, October 6 University, Giza, 12585, Egypt.

Pharmaceutical Chemistry Department, College of Pharmaceutical Sciences and Drug Manufacturing, Misr University for Science and Technology, 6th of October City, Egypt.

出版信息

Eur J Med Chem. 2024 Dec 5;279:116880. doi: 10.1016/j.ejmech.2024.116880. Epub 2024 Sep 14.

DOI:10.1016/j.ejmech.2024.116880
PMID:39303517
Abstract

Inhibition of quorum sensing (QS) is an impending approach for targeting bacterial infection. Fourteen benzo[d]thiazole and 2-pyrazolo[1,5-a]pyrimidin-3-yl)benzo[d]thiazoles analogues were designed and synthesized as promising LasR antagonists with QS inhibition activity. Among the investigated compounds, compounds 3c, 3e, and 8d exhibited the highest percentage inhibition in biofilm formation (77 %, 63.9 %, 69.4 %), pyocyanin production (74.6 %, 64.9, 69.4 %), and rhamnolipids production (58.5 %, 51 %, 54.3 %) in P. aeruginosa, respectively. Additionally, compounds 3c, 3e and 8d achieved IC values against Las R equal 1.37 ± 0.35, 1.55 ± 0.24, 1.1 ± 0.15 μM respectively. Also, molecular docking of the target compounds into the LasR binding site co-crystalized "odDHL" revealed their binding with the essential residues for protein inhibition. Additionally, molecular dynamics simulation (MDS) experiments over 200 ns of compound 3c showed its ability to interact with the LasR binding site with dissociation of the protein's dimer confirming its action as a LasR antagonist. The obtained findings inspire further investigation for benzo[d]thiazole and 2-pyrazolo[1,5-a]pyrimidin-3-yl)benzo[d]thiazoles aiming to design and synthesize more potential QS inhibitors.

摘要

群体感应(QS)抑制是一种针对细菌感染的有前途的方法。设计并合成了 14 个苯并[d]噻唑和 2-吡唑并[1,5-a]嘧啶-3-基)苯并[d]噻唑类似物,作为具有 QS 抑制活性的有前途的 LasR 拮抗剂。在所研究的化合物中,化合物 3c、3e 和 8d 在生物膜形成(77%、63.9%、69.4%)、绿脓菌素产生(74.6%、64.9、69.4%)和鼠李糖脂产生(58.5%、51%、54.3%)方面表现出最高的抑制百分比。此外,化合物 3c、3e 和 8d 对 LasR 的 IC 值分别为 1.37±0.35、1.55±0.24 和 1.1±0.15 μM。此外,将目标化合物对接进入 LasR 结合位点共晶的“odDHL”揭示了它们与抑制蛋白的必需残基结合。此外,化合物 3c 的 200 ns 以上的分子动力学模拟(MDS)实验表明,它能够与 LasR 结合位点相互作用,并使蛋白质的二聚体解离,从而证实了其作为 LasR 拮抗剂的作用。这些发现激发了对苯并[d]噻唑和 2-吡唑并[1,5-a]嘧啶-3-基)苯并[d]噻唑的进一步研究,旨在设计和合成更有潜力的 QS 抑制剂。

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