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利用酵母表面展示技术构建能识别配体结合受体的结合结构域的方案。

Protocol for engineering binding domains to recognize ligand-bound receptors by using yeast surface display.

作者信息

Dobersberger Markus, Sumesgutner Delia, Zajc Charlotte U, Traxlmayr Michael W

机构信息

Department of Chemistry, Institute of Biochemistry, BOKU University, Vienna 1190, Austria.

Department of Chemistry, Institute of Biochemistry, BOKU University, Vienna 1190, Austria; CD Laboratory for Next Generation CAR T Cells, Vienna 1090, Austria.

出版信息

STAR Protoc. 2024 Dec 20;5(4):103339. doi: 10.1016/j.xpro.2024.103339. Epub 2024 Sep 24.

DOI:10.1016/j.xpro.2024.103339
PMID:39321026
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11462054/
Abstract

Yeast surface display is a versatile protein engineering technology, enabling precise control of the applied selection pressure. We present a yeast-surface-display-based protocol for the enrichment of binders specifically recognizing ligand-bound receptors. We describe steps for magnetic bead selections, random mutagenesis, and flow cytometric sorting, followed by library sequencing and detailed analysis of enriched clones. While this approach is exemplified with rcSso7d-based libraries and epidermal growth factor (EGF)-epidermal growth factor receptor (EGFR) complexes, it can also be adapted to other binder scaffolds and ligand-receptor systems. For complete details on the use and execution of this protocol, please refer to Dobersberger et al..

摘要

酵母表面展示是一种通用的蛋白质工程技术,能够精确控制施加的选择压力。我们提出了一种基于酵母表面展示的方案,用于富集特异性识别配体结合受体的结合物。我们描述了磁珠筛选、随机诱变和流式细胞术分选的步骤,随后进行文库测序和对富集克隆的详细分析。虽然该方法以基于rcSso7d的文库和表皮生长因子(EGF)-表皮生长因子受体(EGFR)复合物为例,但它也可适用于其他结合物支架和配体-受体系统。有关此方案使用和执行的完整详细信息,请参考多贝斯贝格尔等人的文献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b2a/11462054/44575af29012/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b2a/11462054/8c09ad20bf9a/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b2a/11462054/e78cba7f27fa/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b2a/11462054/44575af29012/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b2a/11462054/8c09ad20bf9a/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b2a/11462054/e78cba7f27fa/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b2a/11462054/44575af29012/gr2.jpg

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本文引用的文献

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An engineering strategy to target activated EGFR with CAR T cells.一种利用嵌合抗原受体(CAR)T细胞靶向激活型表皮生长因子受体(EGFR)的工程策略。
Cell Rep Methods. 2024 Apr 22;4(4):100728. doi: 10.1016/j.crmeth.2024.100728. Epub 2024 Mar 15.
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Affinity and Stability Analysis of Yeast Displayed Proteins.酵母展示蛋白的亲和力与稳定性分析
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A conformation-specific ON-switch for controlling CAR T cells with an orally available drug.一种构象特异性 ON 开关,可使用口服药物控制 CAR T 细胞。
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Directed evolution of stabilized IgG1-Fc scaffolds by application of strong heat shock to libraries displayed on yeast.通过对展示在酵母上的文库施加强烈热休克来定向进化稳定的IgG1-Fc支架。
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