Computer Aided Drug Design Lab, Department of Pharmaceutical Chemistry, JSS College of Pharmacy, JSS Academy of Higher Education and Research, Sri Shivarathreeshwara Nagara, Mysore, India.
School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
J Enzyme Inhib Med Chem. 2024 Dec;39(1):2403744. doi: 10.1080/14756366.2024.2403744. Epub 2024 Sep 27.
Decaprenylphosphoryl-β-D-ribose-oxidase (DprE1), a subunit of the essential decaprenylphosphoribose-2'-epimerase, plays a crucial role in the synthesis of cell wall arabinan components in mycobacteria, including the pathogen responsible for tuberculosis, . In this study, we designed, synthesised, and evaluated 15 (BOK-1-BOK-10 and BOP-1-BOP-5) potential inhibitors of DprE1 from a series of 1,2,3-triazole ligands using a validated DprE1 inhibition assay. Two compounds, BOK-2 and BOK-3, demonstrated significant inhibition with IC values of 2.2 ± 0.1 and 3.0 ± 0.6 μM, respectively, whereas the standard drug (TCA-1) showed inhibition at 3.0 ± 0.2 μM. Through molecular modelling and dynamic simulations, we explored the structural relationships between selected 1,2,3-triazole compounds and DprE1, revealing key features for effective drug-target interactions. This study introduces a novel approach for designing ligands against DprE1, offering a potential therapeutic strategy for tuberculosis treatment.
去十异戊烯基磷酸-β-D-核糖基-氧化酶(DprE1)是必需的去十异戊烯基磷酸核糖-2′-差向异构酶的亚基,在分枝杆菌细胞壁阿拉伯聚糖成分的合成中起着至关重要的作用,包括引起结核病的病原体。在这项研究中,我们设计、合成并评估了来自一系列 1,2,3-三唑配体的 15 种(BOK-1-BOK-10 和 BOP-1-BOP-5)潜在的 DprE1 抑制剂,使用了经过验证的 DprE1 抑制测定法。两种化合物 BOK-2 和 BOK-3 表现出显著的抑制作用,IC 值分别为 2.2±0.1 和 3.0±0.6 μM,而标准药物(TCA-1)的抑制作用为 3.0±0.2 μM。通过分子建模和动态模拟,我们研究了选定的 1,2,3-三唑化合物与 DprE1 之间的结构关系,揭示了有效药物-靶标相互作用的关键特征。本研究介绍了一种针对 DprE1 的新型配体设计方法,为结核病治疗提供了一种潜在的治疗策略。