Karan Sumita, Kashyap Vipin K, Shafi Syed, Saxena Ajay K
Structural Biology Lab, School of Life Sciences, Jawaharlal Nehru University, Rm-403/440, New Delhi, 110067, India.
Department of Chemistry, Faculty of Science, Jamia Hamdard, Hamdard Nagar, New Delhi, 110062, India.
J Mol Model. 2017 Aug;23(8):241. doi: 10.1007/s00894-017-3403-z. Epub 2017 Jul 25.
Mycobacterium tuberculosis decaprenylphosphoryl-β-D-ribose oxidase (MtbDprE1) acts in concert with decaprenylphosphoryl-β-D-ribose 2-epimerase (MtbDprE2) and catalyzes the epimerization of DPR into DPA. DPA is the sole precursor for synthesis of arabinogalactan and lipoarabinomannan in the mycobacterial cell wall. MtbDprE1 is a unique antimalarial drug target and many covalent and non-covalent inhibitors against MtbDprE1 have been studied for their antituberculosis activities. In the current study, we have purified MtbDprE1 enzyme and synthesized six sulfur-rich 2-mercaptobenzothiazole and 1, 2, 3-triazole conjugated ligands and performed binding analysis with MtbDprE1. All ligands have shown competitive binding, as observed for other covalently and noncovalently bound MtbDprE1 inhibitors. Molecular docking analysis of six ligands with MtbDprE1 shows that they occupy the substrate binding pocket of MtbDprE1 and are stabilized by hydrogen bonds and van der Waals interactions. Our study shows that sulfur-rich 2-mercaptobenzothiazole ligands act as specific inhibitors against MtbDprE1 and could be used as antituberculosis agents.
结核分枝杆菌癸异戊二烯基磷酸化-β-D-核糖氧化酶(MtbDprE1)与癸异戊二烯基磷酸化-β-D-核糖2-表异构酶(MtbDprE2)协同作用,催化DPR向DPA的差向异构化。DPA是分枝杆菌细胞壁中阿拉伯半乳聚糖和脂阿拉伯甘露聚糖合成的唯一前体。MtbDprE1是一种独特的抗疟疾药物靶点,许多针对MtbDprE1的共价和非共价抑制剂的抗结核活性已得到研究。在本研究中,我们纯化了MtbDprE1酶,合成了六种富含硫的2-巯基苯并噻唑和1,2,3-三唑共轭配体,并对MtbDprE1进行了结合分析。所有配体均表现出竞争性结合,这与其他共价和非共价结合的MtbDprE1抑制剂的情况一致。六种配体与MtbDprE1的分子对接分析表明,它们占据了MtbDprE1的底物结合口袋,并通过氢键和范德华相互作用得以稳定。我们的研究表明,富含硫的2-巯基苯并噻唑配体可作为MtbDprE1的特异性抑制剂,并可用作抗结核药物。