整合计算设计与实验方法以实现新一代生物制剂。

Integrating Computational Design and Experimental Approaches for Next-Generation Biologics.

机构信息

Department of Molecular Medicine, Scripps Research, La Jolla, CA 92037, USA.

Department of Bio-AI Convergence, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 34134, Republic of Korea.

出版信息

Biomolecules. 2024 Aug 27;14(9):1073. doi: 10.3390/biom14091073.

Abstract

Therapeutic protein engineering has revolutionized medicine by enabling the development of highly specific and potent treatments for a wide range of diseases. This review examines recent advances in computational and experimental approaches for engineering improved protein therapeutics. Key areas of focus include antibody engineering, enzyme replacement therapies, and cytokine-based drugs. Computational methods like structure-based design, machine learning integration, and protein language models have dramatically enhanced our ability to predict protein properties and guide engineering efforts. Experimental techniques such as directed evolution and rational design approaches continue to evolve, with high-throughput methods accelerating the discovery process. Applications of these methods have led to breakthroughs in affinity maturation, bispecific antibodies, enzyme stability enhancement, and the development of conditionally active cytokines. Emerging approaches like intracellular protein delivery, stimulus-responsive proteins, and de novo designed therapeutic proteins offer exciting new possibilities. However, challenges remain in predicting in vivo behavior, scalable manufacturing, immunogenicity mitigation, and targeted delivery. Addressing these challenges will require continued integration of computational and experimental methods, as well as a deeper understanding of protein behavior in complex physiological environments. As the field advances, we can anticipate increasingly sophisticated and effective protein therapeutics for treating human diseases.

摘要

治疗性蛋白工程通过开发针对广泛疾病的高度特异性和有效治疗方法,彻底改变了医学。本综述考察了用于工程改进蛋白治疗药物的计算和实验方法的最新进展。重点关注的领域包括抗体工程、酶替代疗法和细胞因子类药物。结构基础设计、机器学习集成和蛋白语言模型等计算方法极大地提高了我们预测蛋白特性和指导工程努力的能力。定向进化和合理设计方法等实验技术不断发展,高通量方法加速了发现过程。这些方法的应用导致亲和力成熟、双特异性抗体、酶稳定性增强和条件活性细胞因子的开发方面取得了突破。新兴方法,如细胞内蛋白递药、响应性蛋白和从头设计的治疗性蛋白,提供了令人兴奋的新可能性。然而,在预测体内行为、可扩展制造、免疫原性缓解和靶向递送方面仍然存在挑战。解决这些挑战需要继续整合计算和实验方法,以及更深入地了解蛋白在复杂生理环境中的行为。随着该领域的发展,我们可以期待针对治疗人类疾病的越来越复杂和有效的蛋白治疗药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/818c/11430650/34cabc9e5b30/biomolecules-14-01073-g001.jpg

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