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早期复制子种群动态的进化博弈论方法

Evolutionary Game-Theoretic Approach to the Population Dynamics of Early Replicators.

作者信息

Mariano Matheus S, Fontanari José F

机构信息

Instituto de Física de São Carlos, Universidade de São Paulo, Caixa Postal 369, São Carlos 13560-970, SP, Brazil.

出版信息

Life (Basel). 2024 Aug 25;14(9):1064. doi: 10.3390/life14091064.

Abstract

The population dynamics of early replicators has revealed numerous puzzles, highlighting the difficulty of transitioning from simple template-directed replicating molecules to complex biological systems. The resolution of these puzzles has set the research agenda on prebiotic evolution since the seminal works of Manfred Eigen in the 1970s. Here, we study the effects of demographic noise on the population dynamics of template-directed (non-enzymatic) and protein-mediated (enzymatic) replicators. We borrow stochastic algorithms from evolutionary game theory to simulate finite populations of two types of replicators. These algorithms recover the replicator equation framework in the infinite population limit. For large but finite populations, we use finite-size scaling to determine the probability of fixation and the mean time to fixation near a threshold that delimits the regions of dominance of each replicator type. Since enzyme-producing replicators cannot evolve in a well-mixed population containing replicators that benefit from the enzyme but do not encode it, we study the evolution of enzyme-producing replicators in a finite population structured in temporarily formed random groups of fixed size . We argue that this problem is identical to the weak-altruism version of the -player prisoner's dilemma, and show that the threshold is given by the condition that the reward for altruistic behavior is equal to its cost.

摘要

早期复制因子的种群动态揭示了众多谜题,凸显了从简单的模板导向复制分子向复杂生物系统转变的困难。自20世纪70年代曼弗雷德·艾根的开创性著作以来,这些谜题的解决确定了关于益生元进化的研究议程。在此,我们研究人口统计学噪声对模板导向(非酶促)和蛋白质介导(酶促)复制因子种群动态的影响。我们借鉴进化博弈论中的随机算法来模拟两种复制因子的有限种群。这些算法在无限种群极限情况下恢复了复制因子方程框架。对于大但有限的种群,我们使用有限尺寸标度来确定固定概率以及在界定每种复制因子类型主导区域的阈值附近的固定平均时间。由于产生酶的复制因子无法在包含受益于该酶但不编码该酶的复制因子的均匀混合种群中进化,我们研究了在临时形成的固定大小随机组结构的有限种群中产生酶的复制因子的进化。我们认为这个问题等同于N人囚徒困境的弱利他主义版本,并表明该阈值由利他行为的奖励等于其成本这一条件给出。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f42/11432827/5c0531d8c4da/life-14-01064-g001.jpg

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