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基于力场、量子力学和分子动力学的放射性金属螯合物配合物描述符。

Force Fields, Quantum-Mechanical- and Molecular-Dynamics-Based Descriptors of Radiometal-Chelator Complexes.

机构信息

Department of Physics, University of Cagliari, I-09042 Monserrato (CA), Italy.

出版信息

Molecules. 2024 Sep 17;29(18):4416. doi: 10.3390/molecules29184416.

Abstract

Radiopharmaceuticals are currently a key tool in cancer diagnosis and therapy. Metal-based radiopharmaceuticals are characterized by a radiometal-chelator moiety linked to a bio-vector that binds the biological target (e.g., a protein overexpressed in a particular tumor). The right match between radiometal and chelator influences the stability of the complex and the drug's efficacy. Therefore, the coupling of the radioactive element to the correct chelator requires consideration of several features of the radiometal, such as its oxidation state, ionic radius, and coordination geometry. In this work, we systematically investigated about 120 radiometal-chelator complexes taken from the Cambridge Structural Database. We considered 25 radiometals and about 30 chelators, featuring both cyclic and acyclic geometries. We used quantum mechanics methods at the density functional theoretical level to generate the general AMBER force field parameters and to perform 1 µs-long all-atom molecular dynamics simulations in explicit water solution. From these calculations, we extracted several key molecular descriptors accounting for both electronic- and dynamical-based properties. The whole workflow was carefully validated, and selected test-cases were investigated in detail. Molecular descriptors and force field parameters for the complexes considered in this study are made freely available, thus enabling their use in predictive models, molecular modelling, and molecular dynamics investigations of the interaction of compounds with macromolecular targets. Our work provides new insights in understanding the properties of radiometal-chelator complexes, with a direct impact for rational drug design of this important class of drugs.

摘要

放射性药物目前是癌症诊断和治疗的重要工具。基于金属的放射性药物的特点是放射性金属-螯合剂部分与生物载体相连,该生物载体结合生物靶标(例如,在特定肿瘤中过度表达的蛋白质)。放射性金属和螯合剂之间的正确匹配会影响复合物的稳定性和药物的疗效。因此,将放射性元素与正确的螯合剂偶联需要考虑放射性金属的几个特征,例如其氧化态、离子半径和配位几何形状。在这项工作中,我们系统地研究了来自剑桥结构数据库的约 120 种放射性金属-螯合剂复合物。我们考虑了 25 种放射性金属和约 30 种螯合剂,其具有环状和非环状几何形状。我们使用量子力学方法在密度泛函理论水平上生成通用 AMBER 力场参数,并在明水中进行长达 1 µs 的全原子分子动力学模拟。从这些计算中,我们提取了几个关键的分子描述符,这些描述符既考虑了电子性质又考虑了动力学性质。整个工作流程都经过了仔细验证,并详细研究了选定的测试案例。本研究中考虑的复合物的分子描述符和力场参数是免费提供的,因此可以在预测模型、分子建模和化合物与大分子靶标相互作用的分子动力学研究中使用。我们的工作为理解放射性金属-螯合剂复合物的性质提供了新的见解,对这一类重要药物的合理药物设计具有直接影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a65/11434398/99c93b1702fd/molecules-29-04416-g001.jpg

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