ANA 基因数据库：一个用于 ANA 分级的多组学和分类数据库。

ANAgdb: a multi-omics and taxonomy database for ANA-grade.

机构信息

Co‑Innovation Center for Sustainable Forestry in Southern China, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China.

WeiRan Biotech, Beijing, 100085, China.

出版信息

BMC Plant Biol. 2024 Sep 28;24(1):882. doi: 10.1186/s12870-024-05613-4.

DOI:10.1186/s12870-024-05613-4

PMID:39342076

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11437788/

Abstract

BACKGROUND

The ANA-grade, encompassing early-diverging angiosperm lineages, Amborellales, Nymphaeales, and Austrobaileyales, represents a fundamental phase in the evolutionary history of flowering plants. Since the completion of key assembly of the Amborella genome, the continuous influx of omics data from the lineage underscores the need for a specialized database.

RESULTS

Here, we introduce the ANA-grade Genome Database (ANAgdb, https://anagenome.cn/ ), which integrates multi-omics data including 11 genomes, 167 transcriptomes, and 10 miRNAomes, as well as extensive taxonomic details specific to the ANA-grade. Designed with an array of user-friendly tools, ANAgdb not only facilitates the effective storage, querying, and analysis of data but also enables the integration and dissemination of crucial genomic and taxonomic information.

CONCLUSION

By integrating the comprehensive resources and tools, ANAgdb aims to significantly advance research in phylogenomics and taxonomic studies, providing a robust platform for researchers to explore the genetic and morphological diversities of these ancient plant lineages.

摘要

背景

ANA 级，包含早期分化的被子植物谱系，Amborellales、Nymphaeales 和 Austrobaileyales，代表了开花植物进化历史中的一个基本阶段。自 Amborella 基因组关键组装完成以来，该谱系中不断涌现的组学数据凸显了对专门数据库的需求。

结果

在这里，我们介绍了 ANA 级基因组数据库（ANAgdb，https://anagenome.cn/），它整合了多组学数据，包括 11 个基因组、167 个转录组和 10 个 miRNAome，以及特定于 ANA 级的广泛分类学细节。ANAgdb 设计有一系列用户友好的工具，不仅便于数据的有效存储、查询和分析，还能够实现关键基因组和分类学信息的整合和传播。