College of Horticulture Science and Engineering, Shandong Agricultural University, Tai'an, 271018, Shandong, China.
College of Horticulture, National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China.
BMC Plant Biol. 2023 Sep 15;23(1):430. doi: 10.1186/s12870-023-04406-5.
Pears are among the most important temperate fruit trees in the world, with significant research efforts increasing over the last years. However, available omics data for pear cannot be easily and quickly retrieved to enable further studies using these biological data.
Here, we present a publicly accessible multi-omics pear resource platform, the Pear Genomics Database (PGDB). We collected and collated data on genomic sequences, genome structure, functional annotation, transcription factor predictions, comparative genomics, and transcriptomics. We provide user-friendly functional modules to facilitate querying, browsing and usage of these data. The platform also includes basic and useful tools, including JBrowse, BLAST, phylogenetic tree building, and additional resources providing the possibility for bulk data download and quick usage guide services.
The Pear Genomics Database (PGDB, http://pyrusgdb.sdau.edu.cn ) is an online data analysis and query resource that integrates comprehensive multi-omics data for pear. This database is equipped with user-friendly interactive functional modules and data visualization tools, and constitutes a convenient platform for integrated research on pear.
梨是世界上最重要的温带果树之一，近年来相关研究工作显著增加。然而，现有的梨组学数据不易且无法快速获取，这使得利用这些生物学数据进行进一步的研究变得困难。
本研究构建了一个公开的多组学梨资源平台——梨基因组数据库（PGDB）。我们收集和整理了基因组序列、基因组结构、功能注释、转录因子预测、比较基因组学和转录组学等数据。我们提供了用户友好的功能模块，以方便查询、浏览和使用这些数据。该平台还包括基本且有用的工具，如 JBrowse、BLAST、系统发育树构建，以及其他资源，提供了批量数据下载和快速使用指南服务的可能性。
梨基因组数据库（PGDB，http://pyrusgdb.sdau.edu.cn）是一个整合了梨综合多组学数据的在线数据分析和查询资源。该数据库配备了用户友好的交互式功能模块和数据可视化工具，为梨的综合研究提供了一个便捷的平台。
