Rack Johannes Gregor Matthias, Voorneveld Jim, Longarini Edoardo José, Wijngaarden Sven, Zhu Kang, Peters Alessandra, Sia Jia Jhing, Prokhorova Evgeniia, Ahel Dragana, Matić Ivan, Filippov Dmitri V, Ahel Ivan
MRC Centre for Medical Mycology, University of Exeter, Exeter, UK.
Leiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
J Biol Chem. 2024 Nov;300(11):107838. doi: 10.1016/j.jbc.2024.107838. Epub 2024 Sep 27.
ADP-ribosylation is an ancient posttranslational modification with exceptional versatility in terms of breadth of modification targets including at least seven different amino acid side chains, various moieties on nucleic acids, and a variety of small chemical compounds. The spatiotemporal signaling dynamic of the different modification variations is tightly regulated and depends on the writers, erases, and readers of each type. Among these, tyrosine ADP-ribosylation (Tyr-ADPr) has been consistently detected as a novel modification type, but systematic analysis of its potential physiological role, modification establishment, and reversal are still lacking. Here we present a re-analysis of recent ADP-ribosylome data and show that Tyr-ADPr sites are conserved and enriched among ribosome biogenesis and mRNA processing proteins and that these sites are affected by the status of the (ADP-ribosyl)hydrolase ARH3. To facilitate the study of Tyr-ADPr, we establish methodologies for the synthesis of well-defined Tyr-ADPr peptides and with these could show that Tyr-ADPr is reversed both by ARH3 and PARG enzymes. Together, our work lays the foundation for the future exploration of the Tyr-ADPr.
ADP核糖基化是一种古老的翻译后修饰,在修饰靶点的广度方面具有非凡的通用性,其修饰靶点包括至少七种不同的氨基酸侧链、核酸上的各种基团以及多种小的化合物。不同修饰变体的时空信号动态受到严格调控,并且取决于每种类型的写入器、擦除器和读取器。其中,酪氨酸ADP核糖基化(Tyr-ADPr)一直被检测为一种新型修饰类型,但对其潜在生理作用、修饰建立和逆转的系统分析仍然缺乏。在此,我们对最近的ADP核糖基化组数据进行了重新分析,结果表明Tyr-ADPr位点在核糖体生物合成和mRNA加工蛋白中保守且富集,并且这些位点受(ADP-核糖基)水解酶ARH3状态的影响。为便于研究Tyr-ADPr,我们建立了合成明确的Tyr-ADPr肽的方法,利用这些方法可以证明ARH3和PARG酶均可逆转Tyr-ADPr。我们的工作共同为未来探索Tyr-ADPr奠定了基础。