• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

来自根际的疣微菌门成员Populi菌属菌株的全基因组序列

Complete genome sequence of sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the rhizosphere.

作者信息

Imai Sora, Allen Benjamin, Hochanadel Leah H, Alexander William G, Cottingham Robert W, Schadt Christopher W, Pelletier Dale A, Podar Mircea

机构信息

Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.

出版信息

Microbiol Resour Announc. 2024 Nov 12;13(11):e0080124. doi: 10.1128/mra.00801-24. Epub 2024 Sep 30.

DOI:10.1128/mra.00801-24
PMID:39347696
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11556039/
Abstract

sp. strain Populi is a bacterium from the phylum Verrucomicrobiota, isolated from the rhizosphere of a black cottonwood tree, , from the Cascade mountains in Washington. Its 6.6-Mb chromosome was completely sequenced using Oxford Nanopore long-read sequencing and is predicted to encode 5,301 proteins and 60 RNAs.

摘要

Populi菌株是一种来自疣微菌门的细菌，从华盛顿州喀斯喀特山脉的一棵黑杨树的根际中分离出来。其660万个碱基对的染色体使用牛津纳米孔长读长测序技术进行了全测序，预计编码5301种蛋白质和60种RNA。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afa/11556039/8214604278ed/mra.00801-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afa/11556039/8214604278ed/mra.00801-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1afa/11556039/8214604278ed/mra.00801-24.f001.jpg

相似文献

1
Complete genome sequence of sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the rhizosphere.来自根际的疣微菌门成员Populi菌属菌株的全基因组序列
Microbiol Resour Announc. 2024 Nov 12;13(11):e0080124. doi: 10.1128/mra.00801-24. Epub 2024 Sep 30.
2
Complete genome sequence of sp. strain Populi an actinobacterium isolated from rhizosphere.从根际分离出的一种放线菌——杨树（Populi）菌株的全基因组序列。
Microbiol Resour Announc. 2024 Dec 12;13(12):e0085124. doi: 10.1128/mra.00851-24. Epub 2024 Oct 29.
3
Complete Genome Sequence of the Novel sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.新型疣微菌属菌株ORNL1的全基因组序列，该菌株从三角叶杨根际分离得到。
Microbiol Resour Announc. 2020 Jul 2;9(27):e00617-20. doi: 10.1128/MRA.00617-20.
4
Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Rhizosphere.从根际分离出的嗜酸菌——白色土栖球菌菌株ORNL的全基因组序列
Microbiol Resour Announc. 2019 Nov 14;8(46):e01065-19. doi: 10.1128/MRA.01065-19.
5
Complete Genome Sequence of sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides.从三角叶杨根际分离出的土壤α-变形菌sp.菌株ORNL1的全基因组序列
Microbiol Resour Announc. 2020 Jul 2;9(27):e00644-20. doi: 10.1128/MRA.00644-20.
6
Paenibacillus populi sp. nov., a novel bacterium isolated from the rhizosphere of Populus alba.杨树芽孢杆菌新种，一种从银白杨根际分离出的新型细菌。
Antonie Van Leeuwenhoek. 2015 Sep;108(3):659-66. doi: 10.1007/s10482-015-0521-4. Epub 2015 Jul 2.
7
Polyphase taxonomy and genome analysis reveal the adaptability of Luteolibacter rhizosphaerae sp. nov. to the rhizosphere soil of Ulmus pumila L.多相分类学和基因组分析揭示了Luteolibacter rhizosphaerae sp. nov. 对榆树根际土壤的适应性。
Antonie Van Leeuwenhoek. 2023 Aug;116(8):763-772. doi: 10.1007/s10482-023-01845-w. Epub 2023 May 24.
8
Bacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert.从塔克拉玛干沙漠胡杨根际土壤中分离出的新种杨树芽孢杆菌。
Int J Syst Evol Microbiol. 2018 Jan;68(1):155-159. doi: 10.1099/ijsem.0.002476. Epub 2017 Nov 7.
9
Complete genome sequence of sp. strain LG18, an L-glucose-utilizing bacterium isolated from soil.从土壤中分离出的利用L-葡萄糖的细菌——sp. 菌株LG18的全基因组序列。
Microbiol Resour Announc. 2024 Mar 12;13(3):e0088823. doi: 10.1128/mra.00888-23. Epub 2024 Feb 14.
10
Leaf Endophytes of Act as Pathogens of Neighboring Plant Species.作为邻近植物物种病原体的叶内生菌。
Front Microbiol. 2020 Nov 17;11:573056. doi: 10.3389/fmicb.2020.573056. eCollection 2020.

本文引用的文献

1
Time- and memory-efficient genome assembly with Raven.使用Raven进行高效省时的基因组组装。
Nat Comput Sci. 2021 May;1(5):332-336. doi: 10.1038/s43588-021-00073-4. Epub 2021 May 20.
2
Polyphase taxonomy and genome analysis reveal the adaptability of Luteolibacter rhizosphaerae sp. nov. to the rhizosphere soil of Ulmus pumila L.多相分类学和基因组分析揭示了Luteolibacter rhizosphaerae sp. nov. 对榆树根际土壤的适应性。
Antonie Van Leeuwenhoek. 2023 Aug;116(8):763-772. doi: 10.1007/s10482-023-01845-w. Epub 2023 May 24.
3
Trycycler: consensus long-read assemblies for bacterial genomes.
Trycycler：用于细菌基因组的共识长读长组装。
Genome Biol. 2021 Sep 14;22(1):266. doi: 10.1186/s13059-021-02483-z.
4
Cultivating the Bacterial Microbiota of Roots.培育根系的细菌微生物群
mSystems. 2021 Jun 29;6(3):e0130620. doi: 10.1128/mSystems.01306-20. Epub 2021 Jun 22.
5
Complete Genome Sequence of the Novel sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere.新型疣微菌属菌株ORNL1的全基因组序列，该菌株从三角叶杨根际分离得到。
Microbiol Resour Announc. 2020 Jul 2;9(27):e00617-20. doi: 10.1128/MRA.00617-20.
6
Novel cultivated endophytic Verrucomicrobia reveal deep-rooting traits of bacteria to associate with plants.新型培养的内生疣微菌揭示了细菌与植物共生的根深蒂固的特性。
Sci Rep. 2020 May 26;10(1):8692. doi: 10.1038/s41598-020-65277-6.
7
Niche differentiation is spatially and temporally regulated in the rhizosphere.生境分化在根际中受到时空调节。
ISME J. 2020 Apr;14(4):999-1014. doi: 10.1038/s41396-019-0582-x. Epub 2020 Jan 17.
8
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
9
Enrichment of Verrucomicrobia, Actinobacteria and Burkholderiales drives selection of bacterial community from soil by maize roots in a traditional milpa agroecosystem.在传统的米尔帕农业生态系统中，根瘤菌、放线菌和伯克霍尔德氏菌的富集驱动了玉米根系对土壤细菌群落的选择。
PLoS One. 2018 Dec 20;13(12):e0208852. doi: 10.1371/journal.pone.0208852. eCollection 2018.
10
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.高通量 ANI 分析 9 万余组原核基因组揭示了清晰的物种界限。
Nat Commun. 2018 Nov 30;9(1):5114. doi: 10.1038/s41467-018-07641-9.