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通过网络药理学和实验验证探索三种中药配方抗年龄相关性听力损失的生物活性成分。

Exploring the bioactive ingredients of three traditional Chinese medicine formulas against age-related hearing loss through network pharmacology and experimental validation.

作者信息

Shi Wenying, Zhao Qi, Gao Hongwei, Yang Yaxin, Tan Zhiyong, Li Na, Wang Hongjie, Ji Yonghua, Zhou You

机构信息

School of Basic Medical Sciences, Hebei University, Baoding, 071030, China.

出版信息

Naunyn Schmiedebergs Arch Pharmacol. 2025 Apr;398(4):3731-3759. doi: 10.1007/s00210-024-03464-2. Epub 2024 Oct 2.

DOI:10.1007/s00210-024-03464-2
PMID:39356317
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11978554/
Abstract

Traditional Chinese medicine (TCM) formulas, including the Er-Long-Zuo-Ci pill, Tong-Qiao-Er-Long pill, and Er-Long pill, have long been utilized in China for managing age-related hearing loss (ARHL). However, the specific bioactive compounds, pharmacological targets, and underlying mechanisms remain elusive. This study aims to find the shared bioactive ingredients among these three formulas, uncover the molecular pathways they regulate, and identify potential therapeutic targets for ARHL. Furthermore, it seeks to validate the efficacy of these major components through both in vivo and in vitro experiments. Common bioactive ingredients were extracted from the TCMSP database, and their putative target proteins were predicted using the Swiss Target Prediction database. ARHL-related target proteins were collected from GeneCards and OMIM databases. Our approach involved constructing drug-target networks and drug-disease-specific protein-protein interaction networks and conducting clustering, topological property analyses, and functional annotation through GO and KEGG enrichment analysis. Molecular docking analysis was utilized to delineate interaction mechanisms between major bioactive ingredients and key target proteins. Finally, in vivo and in vitro experiments involving ABR recording, immunofluorescent staining, HE staining, and quantitative PCR were conducted to validate the treatment effects of flavonoids on the declining auditory function in DBA/2 J mice. We identified 11 common chemical compounds across the three formulas and their associated 276 putative targets. Additionally, 3350 ARHL-related targets were compiled. As an intersection of the putative targets of the common compounds and ARHL-related proteins, 145 shared targets were determined. Functional enrichment analysis indicated that these compounds may modulate various biological processes, including cell proliferation, apoptosis, inflammatory response, and synaptic connections. Notably, potential targets such as TNFα, MAPK1, SRC, AKT, EGFR, ESR1, and AR were implicated. Flavonoids emerged as major bioactive components against ARHL based on target numbers, with molecular docking demonstrating diverse interaction models between these flavonoids and protein targets. Furthermore, baicalin could mitigate the age-related cochlear damage and hearing loss of DBA/2 J mice through its multi-target and multi-pathway mechanism, involving anti-inflammation, modulation of sex hormone-related pathways, and activation of potassium channels. This study offers an integrated network pharmacology approach, validated by in vivo and in vitro experiments, shedding light on the potential mechanisms, major active components, and therapeutic targets of TCM formulas for treating ARHL.

摘要

包括二龙左慈丸、通窍二龙丸和二龙丸在内的中药方剂,在中国长期用于治疗年龄相关性听力损失(ARHL)。然而,其具体的生物活性成分、药理靶点及潜在机制仍不清楚。本研究旨在找出这三种方剂中的共同生物活性成分,揭示它们所调控的分子途径,并确定ARHL的潜在治疗靶点。此外,还试图通过体内和体外实验验证这些主要成分的疗效。从中药系统药理学数据库(TCMSP)中提取常见的生物活性成分,并使用瑞士靶点预测数据库预测其假定的靶蛋白。从基因卡片(GeneCards)和在线人类孟德尔遗传数据库(OMIM)中收集ARHL相关的靶蛋白。我们的方法包括构建药物-靶点网络和药物-疾病特异性蛋白质-蛋白质相互作用网络,并通过基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析进行聚类、拓扑性质分析和功能注释。利用分子对接分析来描述主要生物活性成分与关键靶蛋白之间的相互作用机制。最后,进行了涉及听性脑干反应(ABR)记录、免疫荧光染色、苏木精-伊红(HE)染色和定量聚合酶链反应(PCR)的体内和体外实验,以验证黄酮类化合物对DBA/2 J小鼠听觉功能下降的治疗效果。我们在这三种方剂中鉴定出11种常见化合物及其相关的276个假定靶点。此外,还汇编了3350个ARHL相关靶点。作为常见化合物假定靶点与ARHL相关蛋白的交集,确定了145个共同靶点。功能富集分析表明,这些化合物可能调节多种生物学过程,包括细胞增殖、凋亡、炎症反应和突触连接。值得注意的是,涉及到肿瘤坏死因子α(TNFα)、丝裂原活化蛋白激酶1(MAPK1)、Src原癌基因酪氨酸蛋白激酶(SRC)、蛋白激酶B(AKT)、表皮生长因子受体(EGFR)、雌激素受体1(ESR1)和雄激素受体(AR)等潜在靶点。基于靶点数量,黄酮类化合物成为抗ARHL的主要生物活性成分,分子对接显示这些黄酮类化合物与蛋白质靶点之间存在多种相互作用模式。此外,黄芩苷可通过其多靶点、多途径机制减轻DBA/2 J小鼠与年龄相关的耳蜗损伤和听力损失,该机制涉及抗炎、调节性激素相关途径和激活钾通道。本研究提供了一种综合网络药理学方法,并通过体内和体外实验进行了验证,阐明了中药方剂治疗ARHL的潜在机制、主要活性成分和治疗靶点。

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