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通过癌症活检组织的光谱空间分析校准肿瘤生长和侵袭参数。

Calibrating tumor growth and invasion parameters with spectral spatial analysis of cancer biopsy tissues.

作者信息

Pasetto Stefano, Montejo Michael, Zahid Mohammad U, Rosa Marilin, Gatenby Robert, Schlicke Pirmin, Diaz Roberto, Enderling Heiko

机构信息

Department of Integrated Mathematical Oncology, H. Lee Moffitt Cancer Center and Research Institute, 12902 Magnolia Drive, Tampa, FL, USA.

Department of Radiation Oncology, H. Lee Moffitt Cancer Center and Research Institute, 12902 Magnolia Drive, Tampa, FL, USA.

出版信息

NPJ Syst Biol Appl. 2024 Oct 2;10(1):112. doi: 10.1038/s41540-024-00439-0.

Abstract

The reaction-diffusion equation is widely used in mathematical models of cancer. The calibration of model parameters based on limited clinical data is critical to using reaction-diffusion equation simulations for reliable predictions on a per-patient basis. Here, we focus on cell-level data as routinely available from tissue biopsies used for clinical cancer diagnosis. We analyze the spatial architecture in biopsy tissues stained with multiplex immunofluorescence. We derive a two-point correlation function and the corresponding spatial power spectral distribution. We show that this data-deduced power spectral distribution can fit the power spectrum of the solution of reaction-diffusion equations that can then identify patient-specific tumor growth and invasion rates. This approach allows the measurement of patient-specific critical tumor dynamical properties from routinely available biopsy material at a single snapshot in time.

摘要

反应扩散方程在癌症数学模型中被广泛应用。基于有限临床数据对模型参数进行校准,对于利用反应扩散方程模拟在个体患者基础上进行可靠预测至关重要。在此,我们关注从用于临床癌症诊断的组织活检中常规获取的细胞水平数据。我们分析用多重免疫荧光染色的活检组织中的空间结构。我们推导了两点相关函数及相应的空间功率谱分布。我们表明,这种由数据推导得出的功率谱分布能够拟合反应扩散方程解的功率谱,进而可识别患者特异性的肿瘤生长和侵袭率。这种方法能够从常规获取的活检材料在单个时间点的快照中测量患者特异性的关键肿瘤动力学特性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59b8/11447233/6a55512ed8f8/41540_2024_439_Fig1_HTML.jpg

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