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从在印度患病的槟榔棕榈(Areca catechu L.)中发现一种新型的槟榔甲型肝炎样病毒,到通过数据挖掘在蜜蜂和植物转录组中鉴定出已知和新型的槟榔甲型肝炎样病毒。

From the discovery of a novel arepavirus in diseased arecanut palms (Areca catechu L.) in India to the identification of known and novel arepaviruses in bee and plant transcriptomes through data-mining.

机构信息

ICAR-Central Plantation Crops Research Institute (ICAR-CPCRI) Regional Station, Vittal, Karnataka, India.

Division of Genetics and Tree Improvement, ICFRE-Institute of Forest Biodiversity (IFB), Hyderabad, India.

出版信息

Virology. 2024 Dec;600:110256. doi: 10.1016/j.virol.2024.110256. Epub 2024 Oct 2.

DOI:10.1016/j.virol.2024.110256
PMID:39369672
Abstract

Arecanut palm is a commercially important plantation crop valued for its nut. In this investigation, we report the discovery of a putative novel arepavirus, named areca palm necrotic ringspot virus 2 (ANRSV2), in necrotic ringspot diseased areca palms in Bantwal, Dakshina Kannada, Karnataka, India through RNA-sequencing and transmission electron microscopy. Further, the presence of ANRSV2 in the diseased samples was confirmed through reverse transcriptase-polymerase chain reaction assays. In addition, by mining public domain transcriptome data for arepaviral sequences, we identified a putative novel arepavirus in Psychotria rubra, a non-palm host. We recovered the genome sequences of the areca palm necrotic ringspot virus in honey bees, tomato, Onobrychis viciifolia, and Rhamnus heterophylla. These findings broaden our comprehension of arepaviral diversity and host range, and suggest an intriguing possibility of pollen-mediated arepaviral transmission that necessitates empirical validation. Further studies are needed to understand the biology of identified putative novel arepaviruses.

摘要

槟榔是一种具有商业重要性的经济作物,以其坚果而闻名。在本研究中,我们通过 RNA 测序和透射电子显微镜,在印度卡纳塔克邦班图尔的患有坏死环斑病的槟榔中发现了一种假定的新型槟榔坏死环斑病毒 2(ANRSV2)。此外,通过逆转录聚合酶链反应检测,证实了 ANRSV2 存在于患病样本中。此外,通过挖掘公共领域转录组数据中的槟榔病毒序列,我们在非槟榔宿主Psychotria rubra 中鉴定到了一种假定的新型槟榔病毒。我们从蜜蜂蜜蜂、番茄、Onobrychis viciifolia 和 Rhamnus heterophylla 中分离到了槟榔坏死环斑病毒的基因组序列。这些发现拓宽了我们对槟榔病毒多样性和宿主范围的理解,并暗示了花粉介导的槟榔病毒传播的有趣可能性,这需要进行实证验证。需要进一步的研究来了解鉴定出的假定新型槟榔病毒的生物学特性。

相似文献

1
From the discovery of a novel arepavirus in diseased arecanut palms (Areca catechu L.) in India to the identification of known and novel arepaviruses in bee and plant transcriptomes through data-mining.从在印度患病的槟榔棕榈(Areca catechu L.)中发现一种新型的槟榔甲型肝炎样病毒,到通过数据挖掘在蜜蜂和植物转录组中鉴定出已知和新型的槟榔甲型肝炎样病毒。
Virology. 2024 Dec;600:110256. doi: 10.1016/j.virol.2024.110256. Epub 2024 Oct 2.
2
Areca Palm Necrotic Ringspot Virus, Classified Within a Recently Proposed Genus of the Family , Is Associated With Necrotic Ringspot Disease in Areca Palm.槟榔坏死环斑病毒,归类于最近提出的一科的一个属内,与槟榔坏死环斑病有关。
Phytopathology. 2019 May;109(5):887-894. doi: 10.1094/PHYTO-06-18-0200-R. Epub 2019 Mar 25.
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Rapid detection of two emerging viruses associated with necrotic symptoms in Areca catechu L. by reverse transcription loop-mediated isothermal amplification (RT-LAMP).利用逆转录环介导等温扩增技术(RT-LAMP)快速检测槟榔中与坏死症状相关的两种新兴病毒。
J Virol Methods. 2020 Jul;281:113795. doi: 10.1016/j.jviromet.2019.113795. Epub 2019 Dec 3.
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Molecular Detection of Phytoplasma Associated with Yellow Leaf Disease in Areca Palms (Areca catechu) in India.印度槟榔(槟榔)黄叶病相关植原体的分子检测
Plant Dis. 2010 Nov;94(11):1376. doi: 10.1094/PDIS-06-10-0440.
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Phylogenetic analysis identifies a 'Candidatus Phytoplasma oryzae'-related strain associated with yellow leaf disease of areca palm (Areca catechu L.) in India.系统发育分析鉴定出一种与印度槟榔黄叶病有关的“暂定植原体稻株系”。
Int J Syst Evol Microbiol. 2013 Apr;63(Pt 4):1376-1382. doi: 10.1099/ijs.0.043315-0. Epub 2012 Jul 27.
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Biological and Molecular Characterization of Two Closely Related Arepaviruses and Their Antagonistic Interaction in .两种密切相关的阿雷帕病毒的生物学和分子特征及其在……中的拮抗相互作用
Front Microbiol. 2021 Oct 18;12:755156. doi: 10.3389/fmicb.2021.755156. eCollection 2021.
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Analysis of the complete genomic sequence of a novel virus, areca palm necrotic spindle-spot virus, reveals the existence of a new genus in the family Potyviridae.对一种新型病毒——槟榔坏死纺锤斑病毒的全基因组序列分析表明,在马铃薯Y病毒科中存在一个新属。
Arch Virol. 2018 Dec;163(12):3471-3475. doi: 10.1007/s00705-018-3980-x. Epub 2018 Aug 22.
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Transcriptome sequencing and de novo assembly in arecanut, L elucidates the secondary metabolite pathway genes.槟榔转录组测序与从头组装解析其次生代谢物途径基因。
Biotechnol Rep (Amst). 2018 Jan 3;17:63-69. doi: 10.1016/j.btre.2017.12.005. eCollection 2018 Mar.
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Identification and molecular characterization of a novel member of the genus Totivirus from Areca catechu L.从槟榔中鉴定和分子特征分析一个新的番茄潜隐病毒属成员
Arch Virol. 2023 Sep 7;168(10):247. doi: 10.1007/s00705-023-05867-7.
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Chromosome-scale genome assembly of areca palm (Areca catechu).槟榔染色体水平基因组组装。
Mol Ecol Resour. 2021 Oct;21(7):2504-2519. doi: 10.1111/1755-0998.13446. Epub 2021 Jun 29.

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A Comprehensive Screening of the Interactors of Areca Palm Necrotic Ringspot Virus (ANRSV) HCPro2 Highlights the Proviral Roles of eIF4A and PGK in Viral Infection.槟榔坏死环斑病毒(ANRSV)HCPro2相互作用因子的全面筛选凸显了eIF4A和PGK在病毒感染中的前病毒作用。
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