2024年日本DNA数据库（DDBJ）更新：用于共享出版前数据的DDBJ集团云服务。

DDBJ update in 2024: the DDBJ Group Cloud service for sharing pre-publication data.

作者信息

Kodama Yuichi, Ara Takeshi, Fukuda Asami, Tokimatsu Toshiaki, Mashima Jun, Kosuge Takehide, Tanizawa Yasuhiro, Tanjo Tomoya, Ogasawara Osamu, Fujisawa Takatomo, Nakamura Yasukazu, Arita Masanori

机构信息

Bioinformation and DDBJ Center, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.

出版信息

Nucleic Acids Res. 2025 Jan 6;53(D1):D45-D48. doi: 10.1093/nar/gkae882.

DOI:10.1093/nar/gkae882

PMID:39380489

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11701645/

Abstract

The Bioinformation and DNA Data Bank of Japan Center (DDBJ Center, https://www.ddbj.nig.ac.jp) provides public databases that cover a wide range of fields in life sciences. As a founding member of the International Nucleotide Sequence Database Collaboration (INSDC), the DDBJ Center accepts and distributes nucleotide sequence data ranging from raw reads to assembled and annotated sequences with the National Center for Biotechnology Information and the European Bioinformatics Institute. Besides INSDC databases, the DDBJ Center provides databases for functional genomics (Genomic Expression Archive), metabolomics (MetaboBank), human genetic variations (TogoVar-repository) and human genetic and phenotypic data (Japanese Genotype-phenotype Archive). These database systems have been built on the National Institute of Genetics supercomputer, which is also a platform for the DDBJ Group Cloud (DGC) services for sharing and analysis of pre-publication data among research groups. This paper reports recent updates on the databases and the services of the DDBJ Center, highlighting the DGC service.

摘要

日本生物信息与DNA数据库中心（DDBJ中心，https://www.ddbj.nig.ac.jp）提供涵盖生命科学广泛领域的公共数据库。作为国际核苷酸序列数据库合作组织（INSDC）的创始成员，DDBJ中心与美国国立生物技术信息中心和欧洲生物信息学研究所一起接收和分发从原始读数到组装和注释序列的核苷酸序列数据。除了INSDC数据库外，DDBJ中心还提供功能基因组学数据库（基因组表达存档）、代谢组学数据库（代谢组库）、人类遗传变异数据库（TogoVar库）和人类遗传与表型数据库（日本基因型-表型存档）。这些数据库系统建立在国立遗传学研究所的超级计算机上，该超级计算机也是DDBJ集团云（DGC）服务的平台，用于研究小组之间预发布数据的共享和分析。本文报告了DDBJ中心数据库和服务的最新更新情况，重点介绍了DGC服务。