Complete genome sequences of sucrose non-fermenting non-O1/non-O139 isolated from human soft tissue infection.
作者信息
Hwang Haejin, Salo Geraldine, Orth Melanie, Podemski Nicole, Erickson Ray, Jawahir Selina, Cebelinski Elizabeth, Bekele Net, Draxler Brooke, Webb Paul, Verbrugge Emily, Klein Julia R, Schleiss Mark R, Hilt Evann E, Decuir Marijke, Haan Jisun
机构信息
Infectious Disease Laboratory Section, Public Health Laboratory, Minnesota Department of Health, Saint Paul, Minnesota, USA.
Department of Pediatrics, Pediatric Residency Training Program, University of Minnesota, Minneapolis, USA.
出版信息
Microbiol Resour Announc. 2024 Nov 12;13(11):e0018124. doi: 10.1128/mra.00181-24. Epub 2024 Oct 9.
Abstract
This paper describes the hybrid genome assembly of sucrose non-fermenting non-O1/non-O139 isolated from human soft tissue infection. The hybrid assembled genome comprises two circular chromosomes with lengths of 3,001,999 bp and 1,264,051 bp, respectively, with a G + C content of 47.38%.
摘要
相似文献
1
Complete genome sequences of sucrose non-fermenting non-O1/non-O139 isolated from human soft tissue infection.
Microbiol Resour Announc. 2024 Nov 12;13(11):e0018124. doi: 10.1128/mra.00181-24. Epub 2024 Oct 9.
2
Non-O1, non-O139 Vibrio cholerae bacteremic skin and soft tissue infections.非 O1 群、非 O139 霍乱弧菌引起的菌血症性皮肤及软组织感染。
Infect Dis (Lond). 2016;48(3):171-6. doi: 10.3109/23744235.2015.1104720. Epub 2015 Oct 26.
3
[Comparison of colonization ability of O1 and O139 strains on soft-shelled turtle's surface].[O1和O139菌株在甲鱼体表定殖能力的比较]
Zhonghua Yu Fang Yi Xue Za Zhi. 2017 Dec 6;51(12):1102-1107. doi: 10.3760/cma.j.issn.0253-9624.2017.12.010.
4
Comparative genomics for non-O1/O139 Vibrio cholerae isolates recovered from the Yangtze River Estuary versus V. cholerae representative isolates from serogroup O1.非 O1/O139 型霍乱弧菌分离株与 O1 群霍乱弧菌代表分离株的长江口比较基因组学研究
Mol Genet Genomics. 2019 Apr;294(2):417-430. doi: 10.1007/s00438-018-1514-6. Epub 2018 Nov 28.
5
Complete Genome Analysis of Highly Pathogenic Non-O1/O139 Isolated From Reveals Pathogenicity and Antibiotic Resistance-Related Genes.从[具体来源]分离出的高致病性非O1/O139的全基因组分析揭示了与致病性和抗生素抗性相关的基因。
Front Vet Sci. 2022 May 18;9:882885. doi: 10.3389/fvets.2022.882885. eCollection 2022.
6
Scanning the landscape of genome architecture of non-O1 and non-O139 Vibrio cholerae by whole genome mapping reveals extensive population genetic diversity.通过全基因组图谱扫描非O1和非O139霍乱弧菌的基因组结构景观，揭示了广泛的群体遗传多样性。
PLoS One. 2015 Mar 20;10(3):e0120311. doi: 10.1371/journal.pone.0120311. eCollection 2015.
7
Virulence and resistance patterns of non-O1/non-O139 acquired in Germany and other European countries.在德国及其他欧洲国家获得的非O1/非O139型的毒力和耐药模式。
Front Microbiol. 2023 Nov 22;14:1282135. doi: 10.3389/fmicb.2023.1282135. eCollection 2023.
8
Genetic and mutational analysis of virulence traits and their modulation in an environmental toxigenic non-O1/non-O139 strain, VCE232.毒力特性的遗传和突变分析及其在环境产毒非 O1/非 O139 菌株 VCE232 中的调节
Microbiology (Reading). 2022 Feb;168(2). doi: 10.1099/mic.0.001135.
9
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand.泰国临床和环境来源霍乱弧菌的特征及遗传变异
PLoS One. 2017 Jan 19;12(1):e0169324. doi: 10.1371/journal.pone.0169324. eCollection 2017.
10
Prevalence and molecular characterization of Vibrio cholerae O1, non-O1 and non-O139 in tropical seafood in Cochin, India.印度科钦地区热带海产食品中霍乱弧菌 O1、非 O1 和非 O139 的流行情况及分子特征。
Foodborne Pathog Dis. 2013 Mar;10(3):278-83. doi: 10.1089/fpd.2012.1310.
本文引用的文献
1
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
2
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
3
Vibrio cholerae non-O1 bacteraemia: description of three cases in the Netherlands and a literature review.霍乱弧菌非 O1 菌血症：荷兰三例病例描述及文献复习。
Euro Surveill. 2016 Apr 14;21(15). doi: 10.2807/1560-7917.ES.2016.21.15.30197.
4
VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on.VFDB 2016：用于大数据分析的分层细化数据集——十年回顾
Nucleic Acids Res. 2016 Jan 4;44(D1):D694-7. doi: 10.1093/nar/gkv1239. Epub 2015 Nov 17.
5
Non-O1, non-O139 Vibrio cholerae bacteremic skin and soft tissue infections.非 O1 群、非 O139 霍乱弧菌引起的菌血症性皮肤及软组织感染。
Infect Dis (Lond). 2016;48(3):171-6. doi: 10.3109/23744235.2015.1104720. Epub 2015 Oct 26.
6
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO：利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
7
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
8
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
9
Foodborne disease outbreaks caused by sucrose-nonfermenting and beta-galactosidase-deficient variants of Vibrio cholerae.由霍乱弧菌蔗糖不发酵和β-半乳糖苷酶缺陷变体引起的食源性疾病暴发。
Int J Food Microbiol. 2008 Feb 29;122(1-2):148-55. doi: 10.1016/j.ijfoodmicro.2007.11.061. Epub 2007 Nov 28.
10
Isolation of sucrose late-fermenting and nonfermenting variants of Vibrio cholerae O139 Bengal: implications for diagnosis of cholera.霍乱弧菌O139孟加拉型蔗糖迟发酵和不发酵变异株的分离：对霍乱诊断的意义
J Clin Microbiol. 1995 May;33(5):1339-40. doi: 10.1128/jcm.33.5.1339-1340.1995.
Zotero 插件