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WaSPred:一种可靠的基于人工智能的小分子水溶性预测器。

WaSPred: A reliable AI-based water solubility predictor for small molecules.

机构信息

Department of Pharmacy, University of Pisa, Via Bonanno 6, 56126 Pisa, Italy.

Department of Pharmacy, University of Pisa, Via Bonanno 6, 56126 Pisa, Italy.

出版信息

Int J Pharm. 2024 Dec 5;666:124817. doi: 10.1016/j.ijpharm.2024.124817. Epub 2024 Oct 9.

DOI:10.1016/j.ijpharm.2024.124817
PMID:39389475
Abstract

A rapid and reliable evaluation of the aqueous solubility of small molecules is a hot topic for the scientific community and represents a field of particular interest in drug discovery. In fact, aqueous solubility significantly impacts various aspects that collectively influence a drug's overall pharmacokinetics, including absorption, distribution and metabolism. For this reason, in silico approaches that provide fast and cost-effective solubility predictions, can serve as invaluable tools in the early stages of drug development. Although additional molecular features should be considered, accurate solubility predictions can help medicinal chemists rationally planning the synthesis of compounds more likely to exhibit desirable pharmacokinetic properties and in selecting the most promising candidates for further biological testing (e.g., cellular assays) from an initial pool of hit compounds with detected preliminary bioactivity. In this context, we herein report the development and evaluation of WaSPred, our AI-based water solubility predictor for small molecules. WaSPred not only showed high reliability in water solubility predictions performed on structurally heterogeneous compounds, belonging to multiple external datasets, but also demonstrated superior performance compared to a set of other commonly used water solubility predictors, thus confirming its state-of the-art robustness and its usefulness as an in silico approach for water solubility evaluations..

摘要

小分子的快速可靠的水溶性评估是科学界的热门话题,也是药物发现中特别感兴趣的领域。事实上,水溶性显著影响着共同影响药物整体药代动力学的各个方面,包括吸收、分布和代谢。出于这个原因,提供快速且具有成本效益的溶解度预测的计算方法可以在药物开发的早期阶段作为非常有价值的工具。尽管应该考虑其他分子特征,但准确的溶解度预测可以帮助药物化学家合理地规划合成更有可能表现出理想药代动力学特性的化合物,并从具有初步生物活性的初始命中化合物池中选择最有前途的候选化合物进行进一步的生物学测试(例如细胞测定)。在这种情况下,我们在此报告 WaSPred 的开发和评估,这是我们用于小分子的基于人工智能的水溶性预测器。WaSPred 不仅在对属于多个外部数据集的结构异构化合物进行的水溶性预测中表现出高度可靠性,而且与一组其他常用的水溶性预测器相比表现出更好的性能,从而证实了其最先进的稳健性及其作为用于水溶性评估的计算方法的有用性。

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