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人类世的种群连通性和规模缩小:景观和历史瓶颈对白荚蒾破碎栖息地的影响。

Population connectivity and size reductions in the Anthropocene: the consequence of landscapes and historical bottlenecks in white forsythia fragmented habitats.

机构信息

Multidisciplinary Genome Institute, Hallym University, Chuncheon, 24252, South Korea.

Department of Life Science, Hallym University, Chuncheon, 24252, South Korea.

出版信息

BMC Ecol Evol. 2024 Oct 10;24(1):123. doi: 10.1186/s12862-024-02308-0.

Abstract

BACKGROUND

White forsythia (Abeliophyllum distichum) is an endangered Korean Peninsula endemic that has been subjected to recent population genomics studies using SNPs via RAD sequencing. Here, we primarily employed the often underutilized haplotype information from RAD loci to further describe the species' previously uninvestigated haplotype-based genomic variation and structure, and genetic-geographic characteristics and gene flow patterns among its five earlier identified genetic groups. We also inferred the time of past events that may have impacted the effective population size of these groups, as well as the species' potential future distribution amidst the warming climate and anthropogenic threats.

RESULTS

Our findings emphasized the recognition of the species' regional patterns of genetic structure, and the role of topography and its associated gene flow patterns as some of the possible factors that may have influenced the species' present-day fragmented population distribution. The inferred bottleneck events during the Anthropocene, some of which aligned with the time of historical catastrophic events on the Peninsula (e.g., the Korean War), were revealed to have contributed to the generally low effective population size of its five lineages, particularly those with marginal distributional range. Future distribution under both optimistic and pessimistic climatic scenarios suggests unlikely suitable habitats for these populations to expand from their current range limits, at least in the next 80 years.

CONCLUSIONS

The small effective population size and landscape-driven limited gene flow among white forsythia populations will remain a big challenge for the conservation management of the species' already fragmented population distribution. To help mitigate these impacts, the merging of various research approaches and the use of genomic data to their full potential is recommended to provide the optimized knowledge-based tools for the conservation of this endangered species, and other similar plants under pressure.

摘要

背景

白玉棠(Abeliophyllum distichum)是朝鲜半岛特有的濒危物种,最近对其进行了基于 RAD 测序 SNP 的种群基因组学研究。在此,我们主要利用 RAD 位点中经常未被充分利用的单倍型信息,进一步描述了该物种以前未被研究的基于单倍型的基因组变异和结构,以及五个先前确定的遗传群体之间的遗传地理特征和基因流模式。我们还推断了过去可能影响这些群体有效种群大小的事件的时间,以及物种在气候变暖及人为威胁下的潜在未来分布。

结果

我们的研究结果强调了认识物种的区域遗传结构模式的重要性,以及地形及其相关基因流模式作为可能影响物种当前碎片化种群分布的一些因素的作用。推断出的人类世瓶颈事件,其中一些与半岛历史灾难性事件的时间(例如朝鲜战争)相吻合,这些事件导致了五个谱系的有效种群大小普遍较低,特别是那些分布范围较窄的谱系。在乐观和悲观气候情景下的未来分布表明,这些种群不太可能从当前的分布范围扩大,至少在未来 80 年内是如此。

结论

白玉棠种群的有效种群规模较小,受景观驱动的基因流有限,这将是其已经碎片化的种群分布的保护管理的一个重大挑战。为了缓解这些影响,建议将各种研究方法结合起来,并充分利用基因组数据,为保护该濒危物种及其它面临压力的相似植物提供优化的基于知识的工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21be/11465745/003800bf7aa3/12862_2024_2308_Fig1_HTML.jpg

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