• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用高斯过程回归对水中的多体相互作用进行建模。

Modeling Many-Body Interactions in Water with Gaussian Process Regression.

作者信息

Manchev Yulian T, Popelier Paul L A

机构信息

Department of Chemistry, The University of Manchester, Manchester M13 9PL, U.K.

出版信息

J Phys Chem A. 2024 Oct 24;128(42):9345-9351. doi: 10.1021/acs.jpca.4c05873. Epub 2024 Oct 11.

DOI:10.1021/acs.jpca.4c05873
PMID:39393086
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11514001/
Abstract

We report a first-principles water dimer potential that captures many-body interactions through Gaussian process regression (GPR). Modeling is upgraded from previous work by using a custom kernel function implemented through the KeOps library, allowing for much larger GPR models to be constructed and interfaced with the next-generation machine learning force field FFLUX. A new synthetic water dimer data set, called WD24, is used for model training. The resulting models can predict 90% of dimer geometries within chemical accuracy for a test set and in a simulation. The curvature of the potential energy surface is captured by the models, and a successful geometry optimization is completed with a total energy error of just 2.6 kJ mol, from a starting structure where water molecules are separated by nearly 4.3 Å. Dimeric modeling of a flexible, noncrystalline system with FFLUX is shown for the first time.

摘要

我们报告了一种通过高斯过程回归(GPR)捕捉多体相互作用的第一性原理水二聚体势。通过使用通过KeOps库实现的自定义核函数,建模比之前的工作有所升级,这使得能够构建更大的GPR模型,并与下一代机器学习力场FFLUX接口。一个名为WD24的新的合成水二聚体数据集用于模型训练。所得模型在测试集和模拟中能够在化学精度范围内预测90%的二聚体几何结构。模型捕捉到了势能面的曲率,并且从水分子相距近4.3 Å的起始结构开始,成功完成了几何优化,总能量误差仅为2.6 kJ/mol。首次展示了使用FFLUX对柔性非晶系统进行二聚体建模。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/8874ef575c1c/jp4c05873_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/8ebc44ec0043/jp4c05873_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/ca40978a2174/jp4c05873_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/dd1903a126eb/jp4c05873_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/fba079b81c9a/jp4c05873_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/8874ef575c1c/jp4c05873_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/8ebc44ec0043/jp4c05873_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/ca40978a2174/jp4c05873_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/dd1903a126eb/jp4c05873_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/fba079b81c9a/jp4c05873_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef05/11514001/8874ef575c1c/jp4c05873_0005.jpg

相似文献

1
Modeling Many-Body Interactions in Water with Gaussian Process Regression.用高斯过程回归对水中的多体相互作用进行建模。
J Phys Chem A. 2024 Oct 24;128(42):9345-9351. doi: 10.1021/acs.jpca.4c05873. Epub 2024 Oct 11.
2
FFLUX molecular simulations driven by atomic Gaussian process regression models.由原子高斯过程回归模型驱动的FFLUX分子模拟。
J Comput Chem. 2024 Jun 5;45(15):1235-1246. doi: 10.1002/jcc.27323. Epub 2024 Feb 12.
3
Toward Gaussian Process Regression Modeling of a Urea Force Field.迈向尿素力场的高斯过程回归建模。
J Phys Chem A. 2024 Oct 3;128(39):8551-8560. doi: 10.1021/acs.jpca.4c04117. Epub 2024 Sep 20.
4
Gaussian Process Regression Models for Predicting Atomic Energies and Multipole Moments.高斯过程回归模型在预测原子能量和多极矩中的应用。
J Chem Theory Comput. 2023 Feb 28;19(4):1370-1380. doi: 10.1021/acs.jctc.2c00731. Epub 2023 Feb 9.
5
Transfer learning of hyperparameters for fast construction of anisotropic GPR models: design and application to the machine-learned force field FFLUX.用于快速构建各向异性探地雷达模型的超参数迁移学习:设计及在机器学习力场FFLUX中的应用
Phys Chem Chem Phys. 2024 Sep 18;26(36):23677-23691. doi: 10.1039/d4cp01862a.
6
Application of Quantum Chemical Topology Force Field FFLUX to Condensed Matter Simulations: Liquid Water.量子化学拓扑力场 FFLUX 在凝聚态模拟中的应用:液态水。
J Chem Theory Comput. 2022 Sep 13;18(9):5577-5588. doi: 10.1021/acs.jctc.2c00311. Epub 2022 Aug 8.
7
Construction of a Gaussian Process Regression Model of Formamide for Use in Molecular Simulations.构建用于分子模拟的甲酰胺高斯过程回归模型。
J Phys Chem A. 2023 Feb 23;127(7):1702-1714. doi: 10.1021/acs.jpca.2c06566. Epub 2023 Feb 9.
8
DL_FFLUX: A Parallel, Quantum Chemical Topology Force Field.DL_FFLUX:一种并行量子化学拓扑力场。
J Chem Theory Comput. 2021 Nov 9;17(11):7043-7055. doi: 10.1021/acs.jctc.1c00595. Epub 2021 Oct 7.
9
Application of the FFLUX Force Field to Molecular Crystals: A Study of Formamide.FFLUX力场在分子晶体中的应用:甲酰胺的研究
J Chem Theory Comput. 2023 Nov 14;19(21):7946-7959. doi: 10.1021/acs.jctc.3c00578. Epub 2023 Oct 17.
10
Description of Potential Energy Surfaces of Molecules Using FFLUX Machine Learning Models.使用FFLUX机器学习模型描述分子的势能面
J Chem Theory Comput. 2019 Jan 8;15(1):116-126. doi: 10.1021/acs.jctc.8b00806. Epub 2018 Dec 3.

本文引用的文献

1
FFLUX molecular simulations driven by atomic Gaussian process regression models.由原子高斯过程回归模型驱动的FFLUX分子模拟。
J Comput Chem. 2024 Jun 5;45(15):1235-1246. doi: 10.1002/jcc.27323. Epub 2024 Feb 12.
2
Application of the FFLUX Force Field to Molecular Crystals: A Study of Formamide.FFLUX力场在分子晶体中的应用:甲酰胺的研究
J Chem Theory Comput. 2023 Nov 14;19(21):7946-7959. doi: 10.1021/acs.jctc.3c00578. Epub 2023 Oct 17.
3
Interacting Quantum Atoms and Multipolar Electrostatic Study of XH···π Interactions.
相互作用量子原子与XH···π相互作用的多极静电研究
ACS Omega. 2023 Sep 14;8(38):34844-34851. doi: 10.1021/acsomega.3c04149. eCollection 2023 Sep 26.
4
MB-pol(2023): Sub-chemical Accuracy for Water Simulations from the Gas to the Liquid Phase.MB-pol(2023):从气相到液相的水模拟的亚化学精度。
J Chem Theory Comput. 2023 Jun 27;19(12):3551-3566. doi: 10.1021/acs.jctc.3c00326. Epub 2023 May 30.
5
Interfacing q-AQUA with a Polarizable Force Field: The Best of Both Worlds.将 q-AQUA 与极化力场连接:两全其美。
J Chem Theory Comput. 2023 Jun 27;19(12):3446-3459. doi: 10.1021/acs.jctc.3c00334. Epub 2023 May 30.
6
Application of Quantum Chemical Topology Force Field FFLUX to Condensed Matter Simulations: Liquid Water.量子化学拓扑力场 FFLUX 在凝聚态模拟中的应用:液态水。
J Chem Theory Comput. 2022 Sep 13;18(9):5577-5588. doi: 10.1021/acs.jctc.2c00311. Epub 2022 Aug 8.
7
q-AQUA: A Many-Body CCSD(T) Water Potential, Including Four-Body Interactions, Demonstrates the Quantum Nature of Water from Clusters to the Liquid Phase.q-AQUA:一种包含四体相互作用的多体耦合簇单双激发微扰三重态(CCSD(T))水势,展现了从团簇到液相水的量子本质。
J Phys Chem Lett. 2022 Jun 9;13(22):5068-5074. doi: 10.1021/acs.jpclett.2c00966. Epub 2022 Jun 2.
8
Anomalies and Local Structure of Liquid Water from Boiling to the Supercooled Regime as Predicted by the Many-Body MB-pol Model.多体 MB-pol 模型预测的从沸腾到过冷状态下液态水的异常和局域结构。
J Phys Chem Lett. 2022 Apr 28;13(16):3652-3658. doi: 10.1021/acs.jpclett.2c00567. Epub 2022 Apr 18.
9
How good are polarizable and flexible models for water: Insights from a many-body perspective.极化可变形水模型的性能如何:多体视角的见解
J Chem Phys. 2020 Aug 14;153(6):060901. doi: 10.1063/5.0017590.
10
A CCSD(T)-Based 4-Body Potential for Water.基于 CCSD(T)的水的四体势。
J Phys Chem Lett. 2021 Oct 28;12(42):10318-10324. doi: 10.1021/acs.jpclett.1c03152. Epub 2021 Oct 18.