Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100 193, China.
Chaoyang Chaomu Breeding Farm Co., Ltd., Chaoyang, Liaoning 122 629, China.
Zool Res. 2024 Nov 18;45(6):1261-1275. doi: 10.24272/j.issn.2095-8137.2024.125.
Long non-coding RNAs (lncRNAs), which are RNA molecules longer than 200 nucleotides that do not encode proteins, are implicated in a variety of biological processes, including growth and development. Despite research into the role of lncRNAs in skeletal muscle development, the regulatory mechanisms governing ovine skeletal muscle development remain unclear. In this study, we analyzed the expression profiles of lncRNAs in skeletal muscle from 90-day-old embryos (F90), 1-month-old lambs (L30), and 3-year-old adult sheep (A3Y) using RNA sequencing. In total, 4 738 lncRNAs were identified, including 997 that were differentially expressed. Short-time series expression miner analysis identified eight significant expression profiles and a subset of lncRNAs potentially involved in muscle development. Kyoto Encyclopedia of Genes and Genomes enrichment analysis revealed that the predicted target genes of these lncRNAs were primarily enriched in pathways associated with muscle development, such as the cAMP and Wnt signaling pathways. Notably, the expression of lncRNA GTL2 was found to decrease during muscle development. Moreover, GTL2 was highly expressed during the differentiation of skeletal muscle satellite cells (SCs) and was shown to modulate ovine myogenesis by affecting the phosphorylation levels of PKA and CREB. Additionally, GTL2 was found to regulate both the proliferation and differentiation of SCs via the PKA-CREB signaling pathway. Overall, this study provides a valuable resource and offers novel insights into the functional roles and regulatory mechanisms of lncRNAs in ovine skeletal muscle growth and development.
长链非编码 RNA(lncRNA)是指长度大于 200 个核苷酸但不编码蛋白质的 RNA 分子,参与多种生物学过程,包括生长和发育。尽管人们对 lncRNA 在骨骼肌发育中的作用进行了研究,但调控绵羊骨骼肌发育的机制仍不清楚。在这项研究中,我们使用 RNA 测序分析了来自 90 日龄胚胎(F90)、1 月龄羔羊(L30)和 3 岁成年绵羊(A3Y)骨骼肌中的 lncRNA 表达谱。总共鉴定出 4738 个 lncRNA,其中有 997 个差异表达。短时间序列表达 miner 分析鉴定出 8 个显著的表达谱和一组可能参与肌肉发育的 lncRNA。京都基因与基因组百科全书富集分析显示,这些 lncRNA 的预测靶基因主要富集在与肌肉发育相关的途径中,如 cAMP 和 Wnt 信号通路。值得注意的是,lncRNA GTL2 的表达在肌肉发育过程中降低。此外,GTL2 在骨骼肌卫星细胞(SCs)的分化过程中高度表达,并通过影响 PKA 和 CREB 的磷酸化水平来调节绵羊肌发生。此外,GTL2 通过 PKA-CREB 信号通路调控 SCs 的增殖和分化。总的来说,这项研究提供了一个有价值的资源,并为 lncRNA 在绵羊骨骼肌生长和发育中的功能作用和调控机制提供了新的见解。