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成本信息贝叶斯反应优化

Cost-informed Bayesian reaction optimization.

作者信息

Schoepfer Alexandre A, Weinreich Jan, Laplaza Ruben, Waser Jerome, Corminboeuf Clemence

机构信息

Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL) 1015 Lausanne Switzerland

Laboratory of Catalysis and Organic Synthesis, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL) 1015 Lausanne Switzerland

出版信息

Digit Discov. 2024 Oct 1;3(11):2289-2297. doi: 10.1039/d4dd00225c. eCollection 2024 Nov 7.

DOI:10.1039/d4dd00225c
PMID:39398973
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11465108/
Abstract

Bayesian optimization (BO) is an efficient method for solving complex optimization problems, including those in chemical research, where it is gaining significant popularity. Although effective in guiding experimental design, BO does not account for experimentation costs: testing readily available reagents under different conditions could be more cost and time-effective than synthesizing or buying additional ones. To address this issue, we present cost-informed BO (CIBO), an approach tailored for the rational planning of chemical experimentation that prioritizes the most cost-effective experiments. Reagents are used only when their anticipated improvement in reaction performance sufficiently outweighs their costs. Our algorithm tracks available reagents, including those recently acquired, and dynamically updates their cost during the optimization. Using literature data of Pd-catalyzed reactions, we show that CIBO reduces the cost of reaction optimization by up to 90% compared to standard BO. Our approach is compatible with any type of cost, , of buying equipment or compounds, waiting time, as well as environmental or security concerns. We believe CIBO extends the possibilities of BO in chemistry and envision applications for both traditional and self-driving laboratories for experiment planning.

摘要

贝叶斯优化(BO)是一种解决复杂优化问题的有效方法,包括在化学研究中遇到的复杂优化问题,并且在该领域正变得越来越流行。尽管BO在指导实验设计方面很有效,但它没有考虑实验成本:在不同条件下测试现成的试剂可能比合成或购买其他试剂更具成本效益和时间效益。为了解决这个问题,我们提出了成本知情贝叶斯优化(CIBO),这是一种为化学实验的合理规划量身定制的方法,该方法优先考虑最具成本效益的实验。只有当试剂预期的反应性能提升足以超过其成本时,才会使用这些试剂。我们的算法会跟踪可用试剂,包括最近获取的试剂,并在优化过程中动态更新其成本。利用钯催化反应的文献数据,我们表明与标准BO相比,CIBO可将反应优化成本降低多达90%。我们的方法适用于任何类型的成本,如购买设备或化合物的成本、等待时间,以及环境或安全问题。我们相信CIBO扩展了BO在化学领域的可能性,并设想其在传统实验室和自动驾驶实验室的实验规划中都有应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/5b4004be13fa/d4dd00225c-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/c03b5bb07519/d4dd00225c-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/08e5d9c7d323/d4dd00225c-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/fb7c0d7e9c2f/d4dd00225c-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/256abd95f7d5/d4dd00225c-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/5b4004be13fa/d4dd00225c-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/c03b5bb07519/d4dd00225c-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/08e5d9c7d323/d4dd00225c-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/fb7c0d7e9c2f/d4dd00225c-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/256abd95f7d5/d4dd00225c-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8b2/11465108/5b4004be13fa/d4dd00225c-f5.jpg

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