Biochemistry and Bioinformatics Laboratory, Department of Applied Sciences, Indian Institute of Information Technology, Allahabad, (IIIT-A), Devghat, Jhalwa, Prayagraj, Uttar Pradesh, 211012, India.
World J Microbiol Biotechnol. 2024 Oct 15;40(11):348. doi: 10.1007/s11274-024-04162-0.
The rise of multi-drug resistant (MDR) bacteria, especially strains of Staphylococcus aureus like Vancomycin-resistant S. aureus (VRSA), Vancomycin-intermediate S. aureus (VISA), and Vancomycin-susceptible S. aureus (VSSA), poses a severe threat to global health. This situation underscores the urgent need for novel antimicrobial agents to combat these resistant strains effectively. Here, we are introducing the Anti-Vancomycin-Resistant/Intermediate/Susceptible Staphylococcus aureus Peptide Database (AVR/I/SSAPDB), a manually curated comprehensive and specialised knowledgebase dedicated to antimicrobial peptides (AMPs) that target VRSA, VISA, and VSSA with clinical and non-clinical significance. Our database sources data from PubMed, cataloging 491 experimentally validated AMPs with detailed annotations on peptides, activity, and cross-references to external databases like PubMed, UniProt, PDB, and DrugBank. AVR/I/SSAPDB offers a user-friendly interface with simple to advanced and list-based search capabilities, enabling researchers to explore AMPs against VRSA, VISA, and VSSA. We are hoping that this resource will be helpful to the scientific community in developing targeted peptide-based therapeutics, providing a crucial tool for combating VRSA, VISA, and VSSA, and addressing a major public health concern. AVR/I/SSAPDB is freely accessible via any web-browser at URL: https://bblserver.org.in/avrissa/ .
多药耐药(MDR)细菌的兴起,特别是金黄色葡萄球菌(如耐万古霉素金黄色葡萄球菌(VRSA)、中间耐万古霉素金黄色葡萄球菌(VISA)和万古霉素敏感金黄色葡萄球菌(VSSA)),对全球健康构成了严重威胁。这种情况凸显了迫切需要新型抗菌剂来有效对抗这些耐药菌株。在这里,我们介绍了抗万古霉素耐药/中间/敏感金黄色葡萄球菌肽数据库(AVR/I/SSAPDB),这是一个人工 curated 的综合和专业知识库,专门针对具有临床和非临床意义的 VRSA、VISA 和 VSSA 的抗菌肽(AMP)。我们的数据库从 PubMed 中获取数据,对 491 种经过实验验证的 AMP 进行了详细注释,包括肽、活性和与 PubMed、UniProt、PDB 和 DrugBank 等外部数据库的交叉引用。AVR/I/SSAPDB 提供了一个用户友好的界面,具有简单到高级和基于列表的搜索功能,使研究人员能够探索针对 VRSA、VISA 和 VSSA 的 AMP。我们希望这个资源能对科学界开发靶向肽类治疗药物有所帮助,为对抗 VRSA、VISA 和 VSSA 提供一个关键工具,并解决一个主要的公共卫生问题。AVR/I/SSAPDB 可通过任何网络浏览器在 URL:https://bblserver.org.in/avrissa/ 免费访问。