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使用……对逼真的黏土系统进行建模

Modeling Realistic Clay Systems with .

作者信息

Pollak Hannah, Degiacomi Matteo T, Erastova Valentina

机构信息

School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh EH9 3FJ, United Kingdom.

Department of Physics, Durham University, South Road, Durham DH1 3LE, United Kingdom.

出版信息

J Chem Theory Comput. 2024 Nov 12;20(21):9606-9617. doi: 10.1021/acs.jctc.4c00987. Epub 2024 Oct 15.

DOI:10.1021/acs.jctc.4c00987
PMID:39404473
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11562070/
Abstract

Clays are a broad class of ubiquitous layered materials. Their specific chemophysical properties are intimately connected to their molecular structure, featuring repeating patterns broken by substitutions. Molecular dynamics simulations can provide insight into the mechanisms leading to the emergent properties of these layered materials; however, up to now, idealized clay structures have been simulated to make the modeling process tractable. We present , a software facilitating the modeling of clay systems closely resembling experimentally determined structures. By comparing a realistic model to a commonly used montmorillonite clay model, we demonstrate that idealized models feature noticeably different ionic adsorption patterns. We then present an application of to the study the competitive barium and sodium adsorption on Wyoming montmorillonite, Georgia kaolinite, and Montana Illite, of interest in the context of nuclear waste disposal.

摘要

粘土是一类广泛存在的层状材料。它们的特定化学物理性质与其分子结构密切相关,其分子结构具有因取代而被破坏的重复模式。分子动力学模拟可以深入了解导致这些层状材料出现特性的机制;然而,到目前为止,为了使建模过程易于处理,人们一直模拟理想化的粘土结构。我们展示了一款软件,它有助于对与实验确定的结构非常相似的粘土系统进行建模。通过将一个实际模型与一个常用的蒙脱石粘土模型进行比较,我们证明理想化模型具有明显不同的离子吸附模式。然后,我们展示了该软件在研究钡和钠在怀俄明蒙脱石、佐治亚高岭土和蒙大拿伊利石上的竞争性吸附方面的应用,这在核废料处理的背景下具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/8cc45fa16e60/ct4c00987_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/b3643cb1d789/ct4c00987_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/24be5ba3ef9d/ct4c00987_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/034cb6aab086/ct4c00987_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/5e8a72f10cd4/ct4c00987_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/8cc45fa16e60/ct4c00987_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/b3643cb1d789/ct4c00987_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/24be5ba3ef9d/ct4c00987_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/034cb6aab086/ct4c00987_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/5e8a72f10cd4/ct4c00987_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2f1/11562070/8cc45fa16e60/ct4c00987_0005.jpg

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本文引用的文献

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Consequences of Overfitting the van der Waals Radii of Ions.过度拟合离子范德华半径的后果。
J Chem Theory Comput. 2023 Apr 11;19(7):2064-2074. doi: 10.1021/acs.jctc.2c01255. Epub 2023 Mar 23.
3
CHARMM-GUI Nanomaterial Modeler for Modeling and Simulation of Nanomaterial Systems.CHARMM-GUI 纳米材料建模器,用于纳米材料系统的建模和模拟。
J Chem Theory Comput. 2022 Jan 11;18(1):479-493. doi: 10.1021/acs.jctc.1c00996. Epub 2021 Dec 6.
4
Understanding the sorption behaviors of heavy metal ions in the interlayer and nanopore of montmorillonite: A molecular dynamics study.了解重金属离子在蒙脱石层间和纳米孔中的吸附行为:分子动力学研究。
J Hazard Mater. 2021 Aug 15;416:125976. doi: 10.1016/j.jhazmat.2021.125976. Epub 2021 Apr 30.
5
Mineral surface chemistry control for origin of prebiotic peptides.矿质表面化学控制与前生物肽的起源。
Nat Commun. 2017 Dec 11;8(1):2033. doi: 10.1038/s41467-017-02248-y.
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Thermodynamically consistent force fields for the assembly of inorganic, organic, and biological nanostructures: the INTERFACE force field.用于组装无机、有机和生物纳米结构的热力学一致力场:INTERFACE 力场。
Langmuir. 2013 Feb 12;29(6):1754-65. doi: 10.1021/la3038846. Epub 2013 Jan 16.
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MDAnalysis: a toolkit for the analysis of molecular dynamics simulations.MDAnalysis:一个用于分析分子动力学模拟的工具包。
J Comput Chem. 2011 Jul 30;32(10):2319-27. doi: 10.1002/jcc.21787. Epub 2011 Apr 15.
8
Molecular simulation of aqueous solutions at clay surfaces.水相溶液在粘土表面的分子模拟。
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