Drug Discovery and Development Laboratory (DDD Lab), Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700032, India.
Drug Discovery and Development Laboratory (DDD Lab), Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700032, India.
J Hazard Mater. 2024 Dec 5;480:136110. doi: 10.1016/j.jhazmat.2024.136110. Epub 2024 Oct 9.
The increasing presence of active pharmaceutical ingredients (APIs) in aquatic ecosystems, driven by widespread human use, poses significant risks, including acute and chronic toxicity to aquatic species. However, the scarcity of experimental toxicity data on APIs and related compounds due to the high costs, time requirements, and ethical concerns associated with animal testing hinders comprehensive risk assessment. In response, we developed quantitative structure-toxicity relationship (QSTR) and interspecies quantitative structure toxicity-toxicity relationship (i-QSTTR) models for three key aquatic species: zebrafish, water fleas, and green algae, using NOEC as an endpoint, following OECD guidelines. Algae, daphnia, and fish, recognized as standard organisms in toxicity testing, are crucial bio-indicators due to their size, transparency, adaptability, and regulatory acceptance. We used partial least squares (PLS) and multiple linear regression (MLR) methods for model development alongside machine learning techniques such as Random Forest (RF), Support Vector Machines (SVM), K-nearest Neighbor (kNN), and Neural Networks (NN) to enhance the predictivity. Lipophilicity, electronegativity, unsaturation, a molecular cyclized degree in molecular structure, large fragments, aliphatic secondary C(sp), and R-CR-R groups were identified as critical biomarkers for API toxicity. Screening of the PPDB (pesticide properties databases) and DrugBank validated the practical application of these models, offering valuable tools for regulatory decisions, safer API design, and the preservation of aquatic biodiversity.
越来越多的活性药物成分 (API) 由于广泛的人类使用而存在于水生生态系统中,这带来了重大风险,包括对水生物种的急性和慢性毒性。然而,由于动物测试相关的高成本、时间要求和伦理问题,API 及其相关化合物的实验毒性数据稀缺,这阻碍了全面的风险评估。有鉴于此,我们根据 OECD 指南,针对三种关键水生物种:斑马鱼、水蚤和绿藻,使用 NOEC 作为终点,开发了定量结构-毒性关系 (QSTR) 和种间定量结构毒性-毒性关系 (i-QSTTR) 模型。藻类、水蚤和鱼类作为毒性测试中的标准生物,由于其大小、透明度、适应性和监管接受度,是至关重要的生物指标。我们使用偏最小二乘法 (PLS) 和多元线性回归 (MLR) 方法进行模型开发,并结合机器学习技术,如随机森林 (RF)、支持向量机 (SVM)、K-最近邻 (kNN) 和神经网络 (NN),以提高预测能力。亲脂性、电负性、不饱和性、分子结构中环化程度、大碎片、脂肪族仲 C(sp) 和 R-CR-R 基团被确定为 API 毒性的关键生物标志物。对 PPDB(农药性质数据库)和 DrugBank 的筛选验证了这些模型的实际应用,为监管决策、更安全的 API 设计和水生生物多样性的保护提供了有价值的工具。