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蛋白质组装体的以键为中心的模块化设计。

Bond-centric modular design of protein assemblies.

作者信息

Wang Shunzhi, Favor Andrew, Kibler Ryan, Lubner Joshua, Borst Andrew J, Coudray Nicolas, Redler Rachel L, Chiang Huat Thart, Sheffler William, Hsia Yang, Li Zhe, Ekiert Damian C, Bhabha Gira, Pozzo Lilo D, Baker David

机构信息

Department of Biochemistry, University of Washington, Seattle, WA, USA.

Institute for Protein Design, University of Washington, Seattle, WA, USA.

出版信息

bioRxiv. 2024 Oct 12:2024.10.11.617872. doi: 10.1101/2024.10.11.617872.

Abstract

We describe a modular bond-centric approach to protein nanomaterial design inspired by the rich diversity of chemical structures that can be generated from the small number of atomic valencies and bonding interactions. We design protein building blocks with regular coordination geometries and bonding interactions that enable the assembly of a wide variety of closed and opened nanomaterials using simple geometrical principles. Experimental characterization confirms successful formation of more than twenty multi-component polyhedral protein cages, 2D arrays, and 3D protein lattices, with a high (10-50 %) success rate and electron microscopy data closely matching the corresponding design models. Because of the modularity, individual building blocks can assemble with different partners to generate distinct regular assemblies, resulting in an economy of parts and enabling the construction of reconfigurable systems.

摘要

我们描述了一种以键为核心的模块化方法来设计蛋白质纳米材料,其灵感来源于由少量原子价和键相互作用所产生的丰富多样的化学结构。我们设计具有规则配位几何结构和键相互作用的蛋白质构建模块,利用简单的几何原理能够组装出各种各样的封闭和开放的纳米材料。实验表征证实成功形成了二十多种多组分多面体蛋白质笼、二维阵列和三维蛋白质晶格,成功率很高(10 - 50%),并且电子显微镜数据与相应的设计模型紧密匹配。由于其模块化特性,单个构建模块可以与不同的伙伴组装以生成不同的规则组装体,从而实现部件的经济性并能够构建可重构系统。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24f0/11483063/bf56ea6c90f2/nihpp-2024.10.11.617872v1-f0001.jpg

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