Qiao Hongxia, Chen Yajuan, Wang Ruiping, Zhang Wei, Zhang Zhang, Yu Fengqiang, Yang Haifeng, Liu Guiming, Zhang Jiewei
Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.
Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Institute of Biotechnology, Beijing, China.
Front Plant Sci. 2024 Oct 2;15:1411289. doi: 10.3389/fpls.2024.1411289. eCollection 2024.
, commonly known as the sandlive willow, is a vital shrub species within the Salicaceae family, particularly significant for its ecological role in regions susceptible to desertification and sandy soils. In this study, we assembled the complete mitochondrial genome using Pacbio HiFi third-generation sequencing data. The genome was found to be a typical single circular structure, with a total length of 715,555 bp and a GC content of 44.89%. We annotated 33 unique protein-coding genes (PCGs), which included 24 core mitochondrial genes and 9 variable genes, as well as 18 tRNA genes (5 of which were multicopy genes) and 3 rRNA genes. Comparative analysis of the PCGs from the mitochondrial genomes of , , , , and revealed that these genes are relatively conserved within the Salicaceae family, with variability primarily occurring in the ribosomal protein genes. The absence of the , which encodes a ribosomal protein, may have played a role in the evolution of stress tolerance in Salicaceae plants. Additionally, we identified 232 SSRs, 19 tandem repeat sequences, and 236 dispersed repeat sequences in the mitochondrial genome, with palindromic and forward repeats being the most abundant. The longest palindromic repeat measured 260 bp, while the longest forward repeat was 86,068 bp. Furthermore, 324 potential RNA editing sites were discovered, all involving C-to-U edits, with the having the highest number of edits. These findings provide valuable insights into the phylogenetic and genetic research of Salicaceae plants.
,通常被称为沙柳,是杨柳科中一种重要的灌木物种,在易发生荒漠化的地区和沙质土壤中具有特别重要的生态作用。在本研究中,我们使用Pacbio HiFi第三代测序数据组装了完整的线粒体基因组。该基因组被发现是典型的单环结构,全长715,555 bp,GC含量为44.89%。我们注释了33个独特的蛋白质编码基因(PCGs),其中包括24个核心线粒体基因和9个可变基因,以及18个tRNA基因(其中5个是多拷贝基因)和3个rRNA基因。对沙柳、杞柳、旱柳、垂柳和簸箕柳线粒体基因组中的PCGs进行比较分析发现,这些基因在杨柳科内相对保守,变异主要发生在核糖体蛋白基因中。编码核糖体蛋白的基因的缺失可能在杨柳科植物的抗逆性进化中发挥了作用。此外,我们在沙柳线粒体基因组中鉴定出232个简单序列重复(SSRs)、19个串联重复序列和236个分散重复序列,其中回文重复和正向重复最为丰富。最长的回文重复长度为260 bp,而最长的正向重复为86,068 bp。此外,还发现了324个潜在的RNA编辑位点,均涉及C到U的编辑,其中簸箕柳的编辑数量最多。这些发现为杨柳科植物的系统发育和遗传研究提供了有价值的见解。