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利用深度学习对鲜味剂进行计算筛选。

Computational screening of umami tastants using deep learning.

作者信息

Dutta Prantar, Gajula Kishore, Verma Nitu, Jain Deepak, Gupta Rakesh, Rai Beena

机构信息

Physical Sciences Research Area, TCS Research, Tata Consultancy Services, Pune, India.

出版信息

Mol Divers. 2024 Oct 18. doi: 10.1007/s11030-024-11006-4.

Abstract

Umami, a fundamental human taste modality, refers to the savory flavors in meats and broths, often associated with monosodium glutamate and protein richness. With limited knowledge of umami molecules, the food industry seeks efficient approaches for identifying novel tastants. In this study, we have devised a virtual screening pipeline for identifying highly potent umami tastants from large molecular databases. We curated the most extensive classification dataset containing 439 umami and 428 non-umami molecules and trained a transformer-based architecture to differentiate between the two classes, achieving 93% accuracy. Additionally, we built a neural network model for predicting the potency of umami compounds, the first effort of its kind. The classification and potency prediction models were combined with similarity analysis and toxicity screening to build an end-to-end virtual framework for the rational discovery of novel tastants. We applied this framework to the FooDB database containing around 70,000 molecules as an illustrative use case for screening potent umami compounds. The screened molecules were validated using molecular docking with the umami taste receptor. This study demonstrates the potential of data-driven methods in discovering new tastants from structural and chemical features of molecules and proposes an efficient implementation for industrial applications.

摘要

鲜味是人类基本的味觉模式,指肉类和肉汤中的美味,通常与谷氨酸钠和高蛋白含量相关。由于对鲜味分子的了解有限,食品行业寻求高效的方法来识别新型风味剂。在本研究中,我们设计了一种虚拟筛选流程,用于从大分子数据库中识别高效的鲜味风味剂。我们精心整理了最广泛的分类数据集,包含439种鲜味分子和428种非鲜味分子,并训练了一种基于Transformer的架构来区分这两类分子,准确率达到93%。此外,我们构建了一个神经网络模型来预测鲜味化合物的效力,这是同类研究中的首次尝试。分类和效力预测模型与相似性分析和毒性筛选相结合,构建了一个用于合理发现新型风味剂的端到端虚拟框架。我们将这个框架应用于包含约70,000种分子的FooDB数据库,作为筛选高效鲜味化合物的一个示例用例。通过与鲜味味觉受体进行分子对接,对筛选出的分子进行了验证。本研究展示了数据驱动方法从分子的结构和化学特征中发现新风味剂的潜力,并提出了一种适用于工业应用的高效实施方案。

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