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从水苏糖(Bacopa monnieri (L.) Pennell)和黎豆(Mucuna pruriens (L.) DC.)中筛选植物成分,以鉴定对神经酰胺硫酸转移酶有潜在抑制作用的物质。

Screening of phytoconstituents from Bacopa monnieri (L.) Pennell and Mucuna pruriens (L.) DC. to identify potential inhibitors against Cerebroside sulfotransferase.

机构信息

Department of Dravyaguna, Faculty of Ayurveda, Institute of Medical Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India.

出版信息

PLoS One. 2024 Oct 24;19(10):e0307374. doi: 10.1371/journal.pone.0307374. eCollection 2024.

DOI:10.1371/journal.pone.0307374
PMID:39446901
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11500956/
Abstract

Cerebroside sulfotransferase (CST) is considered a target protein in developing substrate reduction therapy for metachromatic leukodystrophy. This study employed a multistep virtual screening approach for getting a specific and potent inhibitor against CST from 35 phytoconstituents of Bacopa monnieri (L.) Pennell and 31 phytoconstituents of Mucuna pruriens (L.) DC. from the IMPPAT 2.0 database. Using a binding score cutoff of -8.0 kcal/mol with ADME and toxicity screening, four phytoconstituents IMPHY009537 (Stigmastenol), IMPHY004141 (alpha-Amyrenyl acetate), IMPHY014836 (beta-Sitosterol), and IMPHY001534 (jujubogenin) were considered for in-depth analysis. In the binding pocket of CST, the major amino acid residues that decide the orientation and interaction of compounds are Lys85, His84, His141, Phe170, Tyr176, and Phe177. The molecular dynamics simulation with a 100ns time span further validated the stability and rigidity of the docked complexes of the four hits by exploring the structural deviation and compactness, hydrogen bond interaction, solvent accessible surface area, principal component analysis, and free energy landscape analysis. Stigmastenol from Bacopa monnieri with no potential cross targets was found to be the most potent and selective CST inhibitor followed by alpha-Amyrenyl acetate from Mucuna pruriens as the second-best performing inhibitor against CST. Our computational drug screening approach may contribute to the development of oral drugs against metachromatic leukodystrophy.

摘要

脑苷脂硫转移酶 (CST) 被认为是开发异染性脑白质营养不良底物还原治疗的靶蛋白。本研究采用多步虚拟筛选方法,从 IMPPAT 2.0 数据库中的巴科帕尼翁尼(L.)彭内尔的 35 种植物成分和穆库纳普鲁里恩斯(L.)DC 的 31 种植物成分中获得针对 CST 的特异性和有效抑制剂。使用结合评分截止值-8.0 kcal/mol 进行 ADME 和毒性筛选,考虑了四种植物成分 IMPHY009537(豆甾醇)、IMPHY004141(α-amyrenyl 乙酸酯)、IMPHY014836(β-谷甾醇)和 IMPHY001534(酸枣仁皂苷)进行深入分析。在 CST 的结合口袋中,决定化合物取向和相互作用的主要氨基酸残基是 Lys85、His84、His141、Phe170、Tyr176 和 Phe177。通过探索结构偏差和紧凑性、氢键相互作用、溶剂可及表面积、主成分分析和自由能景观分析,对 100ns 时间跨度的分子动力学模拟进一步验证了四个命中物对接复合物的稳定性和刚性。发现来自 Bacopa monnieri 的豆甾醇没有潜在的交叉靶标,是最有效和选择性的 CST 抑制剂,其次是来自 Mucuna pruriens 的α-amyrenyl 乙酸酯,是针对 CST 的第二有效抑制剂。我们的计算药物筛选方法可能有助于开发针对异染性脑白质营养不良的口服药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d269/11500956/095cb69b440c/pone.0307374.g008.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d269/11500956/095cb69b440c/pone.0307374.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d269/11500956/008f08b09e5d/pone.0307374.g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d269/11500956/095cb69b440c/pone.0307374.g008.jpg

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