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IMPPAT 2.0:印度药用植物增强版与扩展版植物化学图谱。

IMPPAT 2.0: An Enhanced and Expanded Phytochemical Atlas of Indian Medicinal Plants.

作者信息

Vivek-Ananth R P, Mohanraj Karthikeyan, Sahoo Ajaya Kumar, Samal Areejit

机构信息

The Institute of Mathematical Sciences (IMSc), Chennai 600113, India.

Homi Bhabha National Institute (HBNI), Mumbai 400094, India.

出版信息

ACS Omega. 2023 Feb 23;8(9):8827-8845. doi: 10.1021/acsomega.3c00156. eCollection 2023 Mar 7.

Abstract

Compilation, curation, digitization, and exploration of the phytochemical space of Indian medicinal plants can expedite ongoing efforts toward natural product and traditional knowledge based drug discovery. To this end, we present IMPPAT 2.0, an enhanced and expanded database compiling manually curated information on 4010 Indian medicinal plants, 17,967 phytochemicals, and 1095 therapeutic uses. Notably, IMPPAT 2.0 compiles associations at the level of plant parts and provides a FAIR-compliant nonredundant stereo-aware library of 17,967 phytochemicals from Indian medicinal plants. The phytochemical library has been annotated with several useful properties to enable easier exploration of the chemical space. We have also filtered a subset of 1335 drug-like phytochemicals of which majority have no similarity to existing approved drugs. Using cheminformatics, we have characterized the molecular complexity and molecular scaffold based structural diversity of the phytochemical space of Indian medicinal plants and performed a comparative analysis with other chemical libraries. Altogether, IMPPAT 2.0 is a manually curated extensive phytochemical atlas of Indian medicinal plants that is accessible at https://cb.imsc.res.in/imppat/.

摘要

印度药用植物植物化学空间的编纂、管理、数字化和探索可以加快目前在基于天然产物和传统知识的药物发现方面所做的努力。为此,我们推出了IMPPAT 2.0,这是一个经过增强和扩展的数据库,汇编了关于4010种印度药用植物、17967种植物化学物质和1095种治疗用途的人工整理信息。值得注意的是,IMPPAT 2.0在植物部分层面汇编了关联信息,并提供了一个符合FAIR原则的、非冗余的、具有立体感知的印度药用植物17967种植物化学物质库。该植物化学物质库已标注了多种有用特性,以便更轻松地探索化学空间。我们还筛选出了1335种类药物植物化学物质的子集,其中大多数与现有获批药物没有相似性。利用化学信息学,我们对印度药用植物植物化学空间的分子复杂性和基于分子骨架的结构多样性进行了表征,并与其他化学库进行了比较分析。总之,IMPPAT 2.0是一个人工整理的印度药用植物广泛植物化学图谱,可在https://cb.imsc.res.in/imppat/上获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0dff/9996785/698a910fd3f1/ao3c00156_0002.jpg

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