School of Mechanical Engineering, Purdue University, 585 Purdue Mall, West Lafayette, 47907, IN, USA.
Department of Mechanical and Civil Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, 91125, CA, USA.
Sci Rep. 2024 Oct 24;14(1):25162. doi: 10.1038/s41598-024-75653-1.
Collective migration of eukaryotic cells is often guided by chemotaxis, and is critical in several biological processes, such as cancer metastasis, wound healing, and embryogenesis. Understanding collective chemotaxis has challenged experimental, theoretical and computational scientists because cells can sense very small chemoattractant gradients that are tightly controlled by cell-cell interactions and the regulation of the chemoattractant distribution by the cells. Computational models of collective cell migration that offer a high-fidelity resolution of the cell motion and chemoattractant dynamics in the extracellular space have been limited to a small number of cells. Here, we present Dynamic cluster field modeling (DCF), a novel computational method that enables simulations of collective chemotaxis of cellular systems with cells and high-resolution transport dynamics of the chemoattractant in the time-evolving extracellular space. We illustrate the efficiency and predictive capabilities of our approach by comparing our numerical simulations with experiments in multiple scenarios that involve chemoattractant secretion and uptake by the migrating cells, cell migration in confined spaces, regulation of the attractant distribution by cell motion, and interactions of the chemoattractant with an enzyme. The proposed algorithm opens new opportunities to address outstanding problems that involve collective cell migration in the central nervous system, immune response and cancer metastasis.
真核细胞的集体迁移通常受到趋化作用的指导,在癌症转移、伤口愈合和胚胎发生等几个生物学过程中至关重要。由于细胞可以感知到非常小的趋化剂梯度,而这些梯度受到细胞间相互作用和趋化剂分布的细胞调节的严格控制,因此,对集体趋化作用的理解一直是实验、理论和计算科学家面临的挑战。提供细胞运动和细胞外空间中趋化剂动态高保真分辨率的集体细胞迁移计算模型一直受到限制,只能模拟少数细胞。在这里,我们提出了动态簇场建模(DCF),这是一种新的计算方法,可用于模拟具有 个细胞的细胞系统的集体趋化作用,以及在时间演变的细胞外空间中趋化剂的高分辨率传输动力学。我们通过将我们的数值模拟与涉及趋化剂分泌和摄取、细胞在受限空间中的迁移、细胞运动对趋化剂分布的调节以及趋化剂与酶相互作用的多个场景中的实验进行比较,说明了我们方法的效率和预测能力。所提出的算法为解决涉及中枢神经系统、免疫反应和癌症转移中的集体细胞迁移的未解决问题提供了新的机会。