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利用全基因组标记物探索在亚得里亚海波莫皮特斯地区报道的挪威海螯虾()种群差异。

Exploring reported population differences in Norway lobster () in the Pomo Pits region of the Adriatic Sea using genome-wide markers.

机构信息

Department of Biosciences, Faculty of Health and Life Sciences, University of Exeter, Exeter, Devon, United Kingdom.

National Research Council, Institute for Marine Biological Resources and Biotechnologies (CNR IRBIM), Ancona, Italy.

出版信息

PeerJ. 2024 Oct 21;12:e17852. doi: 10.7717/peerj.17852. eCollection 2024.

DOI:10.7717/peerj.17852
PMID:39450211
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11500701/
Abstract

The Norway lobster () is one of the most important decapod crustacean seafood species in the Adriatic Sea. Previous research has identified significant differences in growth rates and maturation timing of in the Pomo/Jabuka Pits area compared to other subpopulations in Adriatic fishing grounds. Here, we use 1,623 genome-wide single nucleotide polymorphisms (SNPs) to investigate whether the Pomo Pits subpopulation is genetically different from other sites in the Adriatic and neighbouring seas. We found no genetic differentiation among all sampled Adriatic sites, suggesting high gene flow between Pomo Pits and those of surrounding areas. We also found genetic homogeneity between the Adriatic sites and single-site samples from the Aegean and Tyrrhenian Seas. However, we detected distinct genetic differentiation between all Mediterranean sites and an Atlantic site in western Scotland, which provides evidence for a phylogenetic break between the Atlantic and the Mediterranean. Our results indicate that Pomo Pits are not genetically different from others sampled in the Adriatic and that key biological parameters in Pomo Pits could be driven by spatial variation in fishing pressure and/or environmental factors rather than geographic isolation.

摘要

挪威海螯虾()是亚得里亚海最重要的甲壳类海鲜物种之一。先前的研究表明,与亚得里亚海其他渔区的其他亚群相比,波莫/雅布卡坑地区的生长率和成熟时间存在显著差异。在这里,我们使用 1623 个全基因组单核苷酸多态性(SNPs)来研究波莫坑亚群是否与亚得里亚海和邻近海域的其他地点在遗传上存在差异。我们发现所有采样的亚得里亚海地点之间没有遗传分化,表明波莫坑与周围地区的 之间存在高基因流。我们还发现亚得里亚海各地点与爱琴海和第勒尼安海单个地点的样本之间存在遗传同质性。然而,我们在所有地中海地点和苏格兰西部一个大西洋地点之间检测到明显的遗传分化,这为大西洋和地中海之间存在系统发育断裂提供了证据。我们的研究结果表明,波莫坑的 与在亚得里亚海采样的其他种群在遗传上没有差异,并且波莫坑的关键生物学参数可能是由捕捞压力和/或环境因素的空间变化而不是地理隔离所驱动的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda0/11500701/6dc550608698/peerj-12-17852-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda0/11500701/ea654b730889/peerj-12-17852-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda0/11500701/7698e54b3b6d/peerj-12-17852-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda0/11500701/6dc550608698/peerj-12-17852-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda0/11500701/ea654b730889/peerj-12-17852-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda0/11500701/7698e54b3b6d/peerj-12-17852-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda0/11500701/6dc550608698/peerj-12-17852-g003.jpg

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