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无规则结构区域增强膜重塑作用以促进选择性内质网自噬。

Intrinsically disordered region amplifies membrane remodeling to augment selective ER-phagy.

机构信息

Goethe University Frankfurt, School of Medicine, Institute of Biochemistry II, Frankfurt am Main 60590, Germany.

Goethe University Frankfurt, Buchmann Institute for Molecular Life Sciences, Riedberg Campus, Frankfurt am Main 60438, Germany.

出版信息

Proc Natl Acad Sci U S A. 2024 Oct 29;121(44):e2408071121. doi: 10.1073/pnas.2408071121. Epub 2024 Oct 25.

Abstract

Intrinsically disordered regions (IDRs) play a pivotal role in organellar remodeling. They transduce signals across membranes, scaffold signaling complexes, and mediate vesicular traffic. Their functions are regulated by constraining conformational ensembles through specific intra- and intermolecular interactions, physical tethering, and posttranslational modifications. The endoplasmic reticulum (ER)-phagy receptor FAM134B/RETREG1, known for its reticulon homology domain (RHD), includes a substantial C-terminal IDR housing the LC3 interacting motif. Beyond engaging the autophagic machinery, the function of the FAM134B-IDR is unclear. Here, we investigate the characteristics of the FAM134B-IDR by extensive modeling and molecular dynamics simulations. We present detailed structural models for the IDR, mapping its conformational landscape in solution and membrane-anchored configurations. Our analysis reveals that depending on the membrane anchor, the IDRs collapse onto the membrane and induce positive membrane curvature to varying degrees. The charge patterns underlying this Janus-like behavior are conserved across other ER-phagy receptors. We found that IDRs alone are sufficient to sense curvature. When combined with RHDs, they intensify membrane remodeling and drive efficient protein clustering, leading to faster budding, thereby amplifying RHD remodeling functions. Our simulations provide a perspective on IDRs of FAM134B, their Janus-like membrane interactions, and the resulting modulatory functions during large-scale ER remodeling.

摘要

无定形区域(IDR)在细胞器重塑中起着关键作用。它们在膜间传递信号,作为信号复合物的支架,并介导小泡运输。它们的功能受到通过特定的分子内和分子间相互作用、物理束缚和翻译后修饰来限制构象整体的调节。内质网(ER)-自噬受体 FAM134B/RETREG1,因其具有 reticulon 同源结构域(RHD)而闻名,它包含一个很大的 C 端 IDR,其中包含 LC3 相互作用基序。除了与自噬机制结合外,FAM134B-IDR 的功能尚不清楚。在这里,我们通过广泛的建模和分子动力学模拟来研究 FAM134B-IDR 的特性。我们为 IDR 提供了详细的结构模型,绘制了其在溶液中和膜锚定构型中的构象景观。我们的分析表明,取决于膜锚,IDR 会折叠到膜上,并在不同程度上诱导正膜曲率。这种类脂筏样行为的电荷模式在其他 ER-自噬受体中是保守的。我们发现,仅 IDR 就足以感知曲率。当与 RHD 结合时,它们会增强膜重塑并驱动有效的蛋白聚集,从而导致更快的出芽,从而放大 RHD 重塑功能。我们的模拟提供了 FAM134B 的 IDR、它们的类脂筏样膜相互作用以及在大规模 ER 重塑过程中产生的调节功能的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/cf7b0e609053/pnas.2408071121fig01.jpg

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