• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

无规则结构区域增强膜重塑作用以促进选择性内质网自噬。

Intrinsically disordered region amplifies membrane remodeling to augment selective ER-phagy.

机构信息

Goethe University Frankfurt, School of Medicine, Institute of Biochemistry II, Frankfurt am Main 60590, Germany.

Goethe University Frankfurt, Buchmann Institute for Molecular Life Sciences, Riedberg Campus, Frankfurt am Main 60438, Germany.

出版信息

Proc Natl Acad Sci U S A. 2024 Oct 29;121(44):e2408071121. doi: 10.1073/pnas.2408071121. Epub 2024 Oct 25.

DOI:10.1073/pnas.2408071121
PMID:39453744
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11536123/
Abstract

Intrinsically disordered regions (IDRs) play a pivotal role in organellar remodeling. They transduce signals across membranes, scaffold signaling complexes, and mediate vesicular traffic. Their functions are regulated by constraining conformational ensembles through specific intra- and intermolecular interactions, physical tethering, and posttranslational modifications. The endoplasmic reticulum (ER)-phagy receptor FAM134B/RETREG1, known for its reticulon homology domain (RHD), includes a substantial C-terminal IDR housing the LC3 interacting motif. Beyond engaging the autophagic machinery, the function of the FAM134B-IDR is unclear. Here, we investigate the characteristics of the FAM134B-IDR by extensive modeling and molecular dynamics simulations. We present detailed structural models for the IDR, mapping its conformational landscape in solution and membrane-anchored configurations. Our analysis reveals that depending on the membrane anchor, the IDRs collapse onto the membrane and induce positive membrane curvature to varying degrees. The charge patterns underlying this Janus-like behavior are conserved across other ER-phagy receptors. We found that IDRs alone are sufficient to sense curvature. When combined with RHDs, they intensify membrane remodeling and drive efficient protein clustering, leading to faster budding, thereby amplifying RHD remodeling functions. Our simulations provide a perspective on IDRs of FAM134B, their Janus-like membrane interactions, and the resulting modulatory functions during large-scale ER remodeling.

摘要

无定形区域(IDR)在细胞器重塑中起着关键作用。它们在膜间传递信号,作为信号复合物的支架,并介导小泡运输。它们的功能受到通过特定的分子内和分子间相互作用、物理束缚和翻译后修饰来限制构象整体的调节。内质网(ER)-自噬受体 FAM134B/RETREG1,因其具有 reticulon 同源结构域(RHD)而闻名,它包含一个很大的 C 端 IDR,其中包含 LC3 相互作用基序。除了与自噬机制结合外,FAM134B-IDR 的功能尚不清楚。在这里,我们通过广泛的建模和分子动力学模拟来研究 FAM134B-IDR 的特性。我们为 IDR 提供了详细的结构模型,绘制了其在溶液中和膜锚定构型中的构象景观。我们的分析表明,取决于膜锚,IDR 会折叠到膜上,并在不同程度上诱导正膜曲率。这种类脂筏样行为的电荷模式在其他 ER-自噬受体中是保守的。我们发现,仅 IDR 就足以感知曲率。当与 RHD 结合时,它们会增强膜重塑并驱动有效的蛋白聚集,从而导致更快的出芽,从而放大 RHD 重塑功能。我们的模拟提供了 FAM134B 的 IDR、它们的类脂筏样膜相互作用以及在大规模 ER 重塑过程中产生的调节功能的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/2c50984e4aeb/pnas.2408071121fig07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/cf7b0e609053/pnas.2408071121fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/e843a51824e2/pnas.2408071121fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/a2725fdf143f/pnas.2408071121fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/d49e0e02dbce/pnas.2408071121fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/95f7ad28ece7/pnas.2408071121fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/b50fc97fed99/pnas.2408071121fig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/2c50984e4aeb/pnas.2408071121fig07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/cf7b0e609053/pnas.2408071121fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/e843a51824e2/pnas.2408071121fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/a2725fdf143f/pnas.2408071121fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/d49e0e02dbce/pnas.2408071121fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/95f7ad28ece7/pnas.2408071121fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/b50fc97fed99/pnas.2408071121fig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c2f8/11536123/2c50984e4aeb/pnas.2408071121fig07.jpg

相似文献

1
Intrinsically disordered region amplifies membrane remodeling to augment selective ER-phagy.无规则结构区域增强膜重塑作用以促进选择性内质网自噬。
Proc Natl Acad Sci U S A. 2024 Oct 29;121(44):e2408071121. doi: 10.1073/pnas.2408071121. Epub 2024 Oct 25.
2
Janus-like behavior of intrinsically disordered regions in reticulophagy.网状自噬中内在无序区域的类两面神行为
Autophagy. 2025 Mar;21(3):681-683. doi: 10.1080/15548627.2024.2437652. Epub 2025 Jan 3.
3
Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy.FAM134B 网质蛋白同源结构域诱导弯曲和重塑,协助选择性内质网自噬。
Nat Commun. 2019 May 30;10(1):2370. doi: 10.1038/s41467-019-10345-3.
4
Molecular dynamics simulations reveal how the reticulon-homology domain of the autophagy receptor RETREG1/FAM134B remodels membranes for efficient selective reticulophagy.分子动力学模拟揭示了自噬受体 RETREG1/FAM134B 的网质蛋白同源结构域如何重塑膜以实现有效的选择性网质溶酶体。
Autophagy. 2020 Apr;16(4):585-588. doi: 10.1080/15548627.2020.1719725. Epub 2020 Jan 29.
5
FAM134B-RHD Protein Clustering Drives Spontaneous Budding of Asymmetric Membranes.FAM134B-RHD 蛋白簇促使不对称膜自发出芽。
J Phys Chem Lett. 2021 Feb 25;12(7):1926-1931. doi: 10.1021/acs.jpclett.1c00031. Epub 2021 Feb 16.
6
Ubiquitination regulates ER-phagy and remodelling of endoplasmic reticulum.泛素化调节内质网自噬和内质网重塑。
Nature. 2023 Jun;618(7964):394-401. doi: 10.1038/s41586-023-06089-2. Epub 2023 May 24.
7
FAM134B oligomerization drives endoplasmic reticulum membrane scission for ER-phagy.FAM134B 寡聚化驱动内质网膜分裂以进行 ER 自噬。
EMBO J. 2020 Mar 2;39(5):e102608. doi: 10.15252/embj.2019102608. Epub 2020 Jan 13.
8
Intrinsically Disordered Protein TEX264 Mediates ER-phagy.内在无序蛋白 TEX264 介导线粒体自噬。
Mol Cell. 2019 Jun 6;74(5):909-921.e6. doi: 10.1016/j.molcel.2019.03.033. Epub 2019 Apr 18.
9
USP20 deubiquitinates and stabilizes the reticulophagy receptor RETREG1/FAM134B to drive reticulophagy.USP20 通过去泛素化和稳定自噬受体 RETREG1/FAM134B 来驱动网质体自噬。
Autophagy. 2024 Aug;20(8):1780-1797. doi: 10.1080/15548627.2024.2347103. Epub 2024 May 12.
10
Excessive ER-phagy mediated by the autophagy receptor FAM134B results in ER stress, the unfolded protein response, and cell death in HeLa cells.过度的 ER-phagy 通过自噬受体 FAM134B 介导导致 HeLa 细胞内质网应激、未折叠蛋白反应和细胞死亡。
J Biol Chem. 2019 Dec 27;294(52):20009-20023. doi: 10.1074/jbc.RA119.008709. Epub 2019 Nov 20.

引用本文的文献

1
The intrinsically disordered regions of organellophagy receptors are interchangeable and control organelle fragmentation, ER-phagy and mitophagy flux.细胞器自噬受体的内在无序区域是可互换的,并控制细胞器碎片化、内质网自噬和线粒体自噬通量。
Nat Cell Biol. 2025 Sep;27(9):1431-1447. doi: 10.1038/s41556-025-01728-4. Epub 2025 Aug 4.
2
Autophagy, ER-phagy and ER Dynamics During Cell Differentiation.细胞分化过程中的自噬、内质网自噬与内质网动态变化
J Mol Biol. 2025 Sep 15;437(18):169151. doi: 10.1016/j.jmb.2025.169151. Epub 2025 Apr 11.
3
Janus-like behavior of intrinsically disordered regions in reticulophagy.

本文引用的文献

1
Three-step docking by WIPI2, ATG16L1, and ATG3 delivers LC3 to the phagophore.WIPI2、ATG16L1 和 ATG3 的三步对接将 LC3 递送至噬泡体。
Sci Adv. 2024 Feb 9;10(6):eadj8027. doi: 10.1126/sciadv.adj8027. Epub 2024 Feb 7.
2
Direct prediction of intrinsically disordered protein conformational properties from sequence.从序列直接预测内在无序蛋白质的构象性质。
Nat Methods. 2024 Mar;21(3):465-476. doi: 10.1038/s41592-023-02159-5. Epub 2024 Jan 31.
3
Conformational ensembles of the human intrinsically disordered proteome.人类内在无序蛋白质组的构象集合
网状自噬中内在无序区域的类两面神行为
Autophagy. 2025 Mar;21(3):681-683. doi: 10.1080/15548627.2024.2437652. Epub 2025 Jan 3.
Nature. 2024 Feb;626(8000):897-904. doi: 10.1038/s41586-023-07004-5. Epub 2024 Jan 31.
4
Ubiquitination regulates ER-phagy and remodelling of endoplasmic reticulum.泛素化调节内质网自噬和内质网重塑。
Nature. 2023 Jun;618(7964):394-401. doi: 10.1038/s41586-023-06089-2. Epub 2023 May 24.
5
Heteromeric clusters of ubiquitinated ER-shaping proteins drive ER-phagy.泛素化内质网成形蛋白的异源三聚体驱动内质网自噬。
Nature. 2023 Jun;618(7964):402-410. doi: 10.1038/s41586-023-06090-9. Epub 2023 May 24.
6
Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles.结构偏好塑造无序蛋白质集合的熵力。
J Phys Chem B. 2023 May 18;127(19):4235-4244. doi: 10.1021/acs.jpcb.3c00698. Epub 2023 May 8.
7
Identification of potential selective autophagy receptors from protein-content profiling of autophagosomes.从自噬体的蛋白质含量分析中鉴定潜在的选择性自噬受体。
J Cell Biochem. 2024 Nov;125(11):e30405. doi: 10.1002/jcb.30405. Epub 2023 Apr 23.
8
Molecular mechanisms of steric pressure generation and membrane remodeling by disordered proteins.无序蛋白产生空间压力和重塑膜的分子机制。
Biophys J. 2022 Sep 20;121(18):3320-3333. doi: 10.1016/j.bpj.2022.08.028. Epub 2022 Aug 25.
9
Remodeling of the Plasma Membrane by Surface-Bound Protein Monomers and Oligomers: The Critical Role of Intrinsically Disordered Regions.表面结合的蛋白质单体和寡聚体对质膜的重塑:内在无序区域的关键作用。
J Membr Biol. 2022 Dec;255(6):651-663. doi: 10.1007/s00232-022-00256-8. Epub 2022 Aug 5.
10
ER remodeling via ER-phagy.内质网通过内质网自噬进行重塑。
Mol Cell. 2022 Apr 21;82(8):1492-1500. doi: 10.1016/j.molcel.2022.02.018.