Poveda-Cuevas Sergio Alejandro, Lohachova Kateryna, Markusic Borna, Dikic Ivan, Hummer Gerhard, M Bhaskara Ramachandra
School of Medicine, Institute of Biochemistry II, Goethe University Frankfurt, Frankfurt am Main, Germany.
Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany.
Autophagy. 2025 Mar;21(3):681-683. doi: 10.1080/15548627.2024.2437652. Epub 2025 Jan 3.
Intrinsically disordered regions (IDRs) are crucial to homeostatic and organellar remodeling pathways. In reticulophagy/ER-phagy, long cytosolic IDR-containing receptors (e.g. RETREG1/FAM134B) house the LC3-interacting region (LIR) motif to recruit the phagophore. The precise functions of the IDR beyond engaging the autophagic machinery are unclear. Here, we comment on the role of the RETREG1-IDR based on our recent computer modeling and molecular dynamics (MD) simulations. Extensive analysis of the RETREG1-IDR indicates a continuum of conformations between expanded and compact structures, displaying a Janus-like feature. Using an adapted MARTINI model, we find that the IDR ensemble properties vary widely depending on the membrane anchor. IDRs alone are sufficient to promote and sense membrane curvature and can act as entropic tethers. When anchored to the Reticulon homology domain (RHD), they adopt compact collapsed conformations, acting as effector scaffolds that amplify RHD membrane remodeling properties, enhancing receptor-clustering and accelerating spontaneous budding. These findings expand the operational scope of IDRs within reticulophagy, offering fresh insights into a mechanistic understanding of membrane remodeling.
内在无序区域(IDRs)对于稳态和细胞器重塑途径至关重要。在网织红细胞自噬/内质网自噬中,含有长胞质IDR的受体(如RETREG1/FAM134B)带有LC3相互作用区域(LIR)基序,以招募吞噬泡。IDR除了参与自噬机制外的确切功能尚不清楚。在此,我们基于最近的计算机建模和分子动力学(MD)模拟,对RETREG1-IDR的作用进行评论。对RETREG1-IDR的广泛分析表明,在扩展结构和紧凑结构之间存在连续的构象,呈现出两面神样特征。使用适配的MARTINI模型,我们发现IDR的整体性质因膜锚定物而异。单独的IDR足以促进和感知膜曲率,并可作为熵栓。当锚定到网状蛋白同源结构域(RHD)时,它们会采取紧凑的折叠构象,作为效应器支架,放大RHD的膜重塑特性,增强受体聚集并加速自发出芽。这些发现扩展了IDR在网织红细胞自噬中的作用范围,为膜重塑的机制理解提供了新的见解。