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海胆中细菌群落的分类多样性、预测代谢途径及相互作用模式

Taxonomic Diversity, Predicted Metabolic Pathway, and Interaction Pattern of Bacterial Community in Sea Urchin .

作者信息

Chen Xinye, Mo Li, Zhang Lin, Huang Liyu, Gao Ziqing, Peng Jingjing, Yu Zonghe, Zhang Xiaoyong

机构信息

University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China.

出版信息

Microorganisms. 2024 Oct 20;12(10):2094. doi: 10.3390/microorganisms12102094.

Abstract

Bacterial assemblages associated with sea urchin are critical to their physiology and ecology within marine ecosystems. In this study, we characterized the bacterial communities in wild sea urchin captured in Daya Bay, South China Sea. A total of 363 amplicon sequence variants belonging to nine phyla and 141 genera were classified from intestine, body surface, and surrounding seawater samples. Proteobacteria, Firmicutes, and Bacteroidetes were the dominant bacteria phyla found in this study. A network analysis of bacterial interspecies interactions revealed varying complexity, stability, connectivity, and relationship patterns across the samples, with the most intricate network observed in the surrounding seawater. Metagenomic predictions highlighted the distinct bacterial metabolic pathways, with significant differences between intestine and seawater samples. Notably, pathways associated with polysaccharide degradation, including chitin derivatives, starch, and CoM biosynthesis, were markedly abundant, underscoring the gut microbiota's key role in digesting algae. In addition, other metabolic pathways in intestine samples were linked to immune response regulation of sea urchins. Overall, this study provides a comprehensive overview of the bacterial community structure and potential functional roles in A. crassispina.

摘要

与海胆相关的细菌群落对它们在海洋生态系统中的生理和生态至关重要。在本研究中,我们对在中国南海大亚湾捕获的野生海胆中的细菌群落进行了特征分析。从肠道、体表和周围海水样本中总共分类出了属于9个门和141个属的363个扩增子序列变体。变形菌门、厚壁菌门和拟杆菌门是本研究中发现的主要细菌门类。细菌种间相互作用的网络分析揭示了不同样本之间在复杂性、稳定性、连通性和关系模式方面的差异,其中在周围海水中观察到的网络最为复杂。宏基因组预测突出了不同的细菌代谢途径,肠道和海水样本之间存在显著差异。值得注意的是,与多糖降解相关的途径,包括几丁质衍生物、淀粉和辅酶M生物合成,明显丰富,这突出了肠道微生物群在消化藻类中的关键作用。此外,肠道样本中的其他代谢途径与海胆的免疫反应调节有关。总体而言,本研究全面概述了粗棘海星中细菌群落结构及其潜在的功能作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dbae/11514596/e1b2638a6b75/microorganisms-12-02094-g001.jpg

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