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利用荧光AFLP标记研究破碎化生境中濒危兰花的遗传多样性和种群结构

Genetic Diversity and Population Structure of Endangered Orchid in Fragmented Habitat Using Fluorescent AFLP Markers.

作者信息

Hu Shijun, Wang Meizhen, Yan Xiaohui, Cheng Xiaomao

机构信息

Key Laboratory of National Forestry and Grassland Administration on Biodiversity Conservation in Southwest China, Southwest Forestry University, Kunming 650224, China.

Key Laboratory of Forest Disaster Warning and Control of Yunnan Province, Southwest Forestry University, Kunming 650224, China.

出版信息

Plants (Basel). 2024 Oct 11;13(20):2851. doi: 10.3390/plants13202851.

DOI:10.3390/plants13202851
PMID:39458798
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11511173/
Abstract

Genetic diversity is crucial for determining the evolutionary potential of a species and is essential for developing optimal conservation strategies. The impact of habitat fragmentation on the genetic diversity of food-deceptive orchids seems to be unpredictable because of their specialized seed and pollen dispersal mechanisms. The habitat of deceptive was severely fragmented during the past half century. This study investigated the genetic diversity and structure of seven fragmented populations in Shangrila County using AFLP markers. A total of 376 alleles were identified, with a range of 70 to 81 alleles per locus. The species exhibited considerable genetic diversity, as evidenced by an average Nei's gene diversity () of 0.339 and a Shannon's information index () of 0.505, with all loci being polymorphic. Based on Molecular Variance (AMOVA), 8.75% of the genetic differentiation was found among populations, while the remaining 91.25% of genetic variation occurred within populations. Population structure analysis revealed that the germplasm can be categorized into 2 distinct groups, among which there was significant gene flow. Despite habitat fragmentation, still retained a high level of genetic diversity, and the substantial gene flow (5.0826) is a key factor in maintaining the genetic diversity. These findings offer valuable insights for the conservation and potential use of genetic resources.

摘要

遗传多样性对于确定一个物种的进化潜力至关重要,对于制定最佳保护策略也必不可少。由于其特殊的种子和花粉传播机制,生境破碎化对食源性欺骗性兰花遗传多样性的影响似乎难以预测。在过去的半个世纪里,欺骗性兰花的栖息地严重破碎化。本研究使用AFLP标记调查了香格里拉县七个破碎化种群的遗传多样性和结构。共鉴定出376个等位基因,每个位点的等位基因范围为70至81个。该物种表现出相当高的遗传多样性,平均奈氏基因多样性()为0.339,香农信息指数()为0.505,所有位点均为多态性。基于分子方差分析(AMOVA),发现种群间8.75%的遗传分化,而其余91.25%的遗传变异发生在种群内。种群结构分析表明,该兰花种质可分为2个不同的组,其中存在显著的基因流。尽管生境破碎化,该兰花仍保留了高水平的遗传多样性,大量的基因流(5.0826)是维持遗传多样性的关键因素。这些发现为该兰花遗传资源的保护和潜在利用提供了有价值的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e4b8/11511173/c5dbf9673c47/plants-13-02851-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e4b8/11511173/d3c61951dbbe/plants-13-02851-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e4b8/11511173/2d762590707e/plants-13-02851-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e4b8/11511173/68fd2c72cbf5/plants-13-02851-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e4b8/11511173/c5dbf9673c47/plants-13-02851-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e4b8/11511173/d3c61951dbbe/plants-13-02851-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e4b8/11511173/2d762590707e/plants-13-02851-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e4b8/11511173/68fd2c72cbf5/plants-13-02851-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e4b8/11511173/c5dbf9673c47/plants-13-02851-g004.jpg

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本文引用的文献

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Evol Appl. 2024 Sep 4;17(9):e13686. doi: 10.1111/eva.13686. eCollection 2024 Sep.
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Genetic Variability in Balkan Paleoendemic Resurrection Plants and Across Their Range and in the Zone of Sympatry.巴尔干古特有复苏植物及其分布范围内和同域分布区域的遗传变异性。
Front Plant Sci. 2022 Apr 28;13:873471. doi: 10.3389/fpls.2022.873471. eCollection 2022.
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Genetic structure of the endemic revealed by microsatellite markers.
微卫星标记揭示的地方病的遗传结构。
AoB Plants. 2022 Feb 23;14(2):plac007. doi: 10.1093/aobpla/plac007. eCollection 2022 Apr.
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Genetic Diversity on a Rare Terrestrial Orchid, in South Korea: Implications for Conservation Offered by Genome-Wide Single Nucleotide Polymorphisms.韩国一种珍稀地生兰花的遗传多样性:全基因组单核苷酸多态性对保护的启示
Front Plant Sci. 2022 Feb 24;13:772621. doi: 10.3389/fpls.2022.772621. eCollection 2022.
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Genetic diversity and population structure of (Theaceae), a limestone species with narrow geographic range, based on chloroplast DNA sequence and microsatellite markers.基于叶绿体DNA序列和微卫星标记的具有狭窄地理分布范围的石灰岩物种(茶科)的遗传多样性和种群结构
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