机会致病菌菌株LPB4002的全基因组及其生物合成潜力。
Complete genome of the opportunistic pathogen strain LPB4002 and its biosynthetic potential.
作者信息
González-Nava Janette, Salinas-Virgen Leilani I, Sandoval-Trujillo Horacio, Torre-Hernández Ma Eugenia de la, Ramírez-Saad Hugo
机构信息
Estancias Posdoctorales por México, CONAHCYT - UAM-Xochimilco, Mexico City, Mexico.
Doctorado en Ciencias Agropecuarias, UAM-Xochimilco, Mexico City, Mexico.
出版信息
Microbiol Resour Announc. 2024 Dec 12;13(12):e0084024. doi: 10.1128/mra.00840-24. Epub 2024 Oct 29.
Abstract
The complete genome sequence of the opportunistic pathogen is reported. The strain LPB4002 was isolated from a clinical sample of a patient with actinomycetoma. The reported genome comprises a single 9,489-Kb closed chromosome, with 8,584 protein-coding genes and 68% GC content.
摘要
报道了该机会致病菌的全基因组序列。菌株LPB4002是从一名放线菌瘤患者的临床样本中分离出来的。报道的基因组包含一条单一的9489kb闭合染色体，有8584个蛋白质编码基因，GC含量为68%。
相似文献
1
Complete genome of the opportunistic pathogen strain LPB4002 and its biosynthetic potential.机会致病菌菌株LPB4002的全基因组及其生物合成潜力。
Microbiol Resour Announc. 2024 Dec 12;13(12):e0084024. doi: 10.1128/mra.00840-24. Epub 2024 Oct 29.
2
First Case of Actinomycetoma in France Due to a Novel Species, sp. nov.法国首例由新物种放线菌瘤引起的放线菌病，新物种，新种
mSphere. 2016 Nov 23;1(6). doi: 10.1128/mSphere.00309-16. eCollection 2016 Nov-Dec.
3
Draft Genome Sequence of Mycobacterium vulneris DSM 45247T.脆弱分枝杆菌DSM 45247T的基因组序列草图
Genome Announc. 2014 May 8;2(3):e00370-14. doi: 10.1128/genomeA.00370-14.
4
sp. nov., a new pathogen isolated from a patient with primary cutaneous nocardiosis.sp. nov.，一种从原发性皮肤诺卡氏菌病患者中分离出的新病原体。
Int J Syst Evol Microbiol. 2020 May;70(5):2981-2987. doi: 10.1099/ijsem.0.003856.
5
Case Report: Disseminated Nocardiosis Caused by in a Patient With Macroglobulinemia.病例报告：巨球蛋白血症患者由 引起的播散性奴卡菌病。
Front Public Health. 2022 May 10;10:866420. doi: 10.3389/fpubh.2022.866420. eCollection 2022.
6
Nocardia vulneris sp. nov., isolated from wounds of human patients in North America.新诺卡氏菌属创伤诺卡氏菌，从北美人类患者伤口分离得到。
Antonie Van Leeuwenhoek. 2014 Sep;106(3):543-53. doi: 10.1007/s10482-014-0226-0.
7
Identification and Mobilization of a Cryptic Antibiotic Biosynthesis Gene Locus from a Human-Pathogenic Isolate.从一株人源致病菌中鉴定和挖掘隐性抗生素生物合成基因座。
ACS Chem Biol. 2020 May 15;15(5):1161-1168. doi: 10.1021/acschembio.9b00763. Epub 2019 Nov 14.
8
Escherichia vulneris: an unusual cause of complicated diarrhoea and sepsis in an infant. A case report and review of literature.脆弱埃希菌：婴儿复杂性腹泻和败血症的罕见病因。病例报告及文献复习
New Microbes New Infect. 2016 Jul 9;13:83-6. doi: 10.1016/j.nmni.2016.07.002. eCollection 2016 Sep.
9
Complete genome sequence of Nocardia brasiliensis HUJEG-1.巴西诺卡氏菌 HUJEG-1 的全基因组序列。
J Bacteriol. 2012 May;194(10):2761-2. doi: 10.1128/JB.00210-12.
10
Nocardia noduli sp. nov., a novel actinobacterium with biotechnological potential.新型诺卡氏放线菌结节亚种，具有生物技术潜力的新型放线菌。
Arch Microbiol. 2022 Apr 13;204(5):260. doi: 10.1007/s00203-022-02878-x.
本文引用的文献
1
Case Report: Disseminated Nocardiosis Caused by in a Patient With Macroglobulinemia.病例报告：巨球蛋白血症患者由 引起的播散性奴卡菌病。
Front Public Health. 2022 May 10;10:866420. doi: 10.3389/fpubh.2022.866420. eCollection 2022.
2
Biodiversity of Secondary Metabolites Compounds Isolated from Phylum Actinobacteria and Its Therapeutic Applications.从放线菌门中分离的次生代谢产物的多样性及其治疗应用。
Molecules. 2021 Jul 26;26(15):4504. doi: 10.3390/molecules26154504.
3
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.RefSeq：通过蛋白质家族模型编纂扩展原核生物基因组注释管道的覆盖范围。
Nucleic Acids Res. 2021 Jan 8;49(D1):D1020-D1028. doi: 10.1093/nar/gkaa1105.
4
Isolated Nocardiosis, an Unrecognized Primary Immunodeficiency?孤立性奴卡菌病，一种未被认识的原发性免疫缺陷病？
Front Immunol. 2020 Oct 20;11:590239. doi: 10.3389/fimmu.2020.590239. eCollection 2020.
5
Antimicrobial biosynthetic potential and diversity of culturable soil actinobacteria from forest ecosystems of Northeast India.印度东北部森林生态系统中可培养土壤放线菌的抗菌生物合成潜力和多样性。
Sci Rep. 2020 Mar 5;10(1):4104. doi: 10.1038/s41598-020-60968-6.
6
Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis.16S rRNA 基因测序在微生物组物种和菌株水平分析中的评估。
Nat Commun. 2019 Nov 6;10(1):5029. doi: 10.1038/s41467-019-13036-1.
7
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
8
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.推出 EzBioCloud：一个统一分类学的 16S rRNA 基因序列和全基因组组装数据库。
Int J Syst Evol Microbiol. 2017 May;67(5):1613-1617. doi: 10.1099/ijsem.0.001755. Epub 2017 May 30.
9
Nocardia vulneris sp. nov., isolated from wounds of human patients in North America.新诺卡氏菌属创伤诺卡氏菌，从北美人类患者伤口分离得到。
Antonie Van Leeuwenhoek. 2014 Sep;106(3):543-53. doi: 10.1007/s10482-014-0226-0.
10
New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: detection and distribution of these biosynthetic gene sequences in major taxonomic groups.用于筛选放线菌中NRPS和PKS-I系统的新型PCR引物：这些生物合成基因序列在主要分类群中的检测与分布
Microb Ecol. 2005 Jan;49(1):10-24. doi: 10.1007/s00248-004-0249-6. Epub 2004 Dec 21.
Zotero 插件