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细菌光激活腺苷酸环化酶的晶体结构通过连续飞秒和连续同步辐射晶体学测定。

Crystal structure of a bacterial photoactivated adenylate cyclase determined by serial femtosecond and serial synchrotron crystallography.

机构信息

Université Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, 38044 Grenoble, France.

European Molecular Biology Laboratory (EMBL), Hamburg Unit c/o DESY, Notkestrasse 85, 22607 Hamburg, Germany.

出版信息

IUCrJ. 2024 Nov 1;11(Pt 6):991-1006. doi: 10.1107/S2052252524010170.

Abstract

OaPAC is a recently discovered blue-light-using flavin adenosine dinucleotide (BLUF) photoactivated adenylate cyclase from the cyanobacterium Oscillatoria acuminata that uses adenosine triphosphate and translates the light signal into the production of cyclic adenosine monophosphate. Here, we report crystal structures of the enzyme in the absence of its natural substrate determined from room-temperature serial crystallography data collected at both an X-ray free-electron laser and a synchrotron, and we compare these structures with cryo-macromolecular crystallography structures obtained at a synchrotron by us and others. These results reveal slight differences in the structure of the enzyme due to data collection at different temperatures and X-ray sources. We further investigate the effect of the Y6W mutation in the BLUF domain, a mutation which results in a rearrangement of the hydrogen-bond network around the flavin and a notable rotation of the side chain of the critical Gln48 residue. These studies pave the way for picosecond-millisecond time-resolved serial crystallography experiments at X-ray free-electron lasers and synchrotrons in order to determine the early structural intermediates and correlate them with the well studied picosecond-millisecond spectroscopic intermediates.

摘要

OaPAC 是一种最近从蓝藻 Oscillatoria acuminata 中发现的蓝光利用黄素腺嘌呤二核苷酸 (BLUF) 光激活的环化酶,它使用三磷酸腺苷并将光信号转化为环单磷酸腺苷的产生。在这里,我们报告了在没有其天然底物的情况下,通过室温连续晶体学数据从 X 射线自由电子激光和同步加速器收集来确定该酶的晶体结构,并将这些结构与我们和其他人在同步加速器上通过低温电子显微镜获得的晶体结构进行了比较。这些结果表明,由于在不同温度和 X 射线源下进行数据收集,酶的结构略有差异。我们进一步研究了 BLUF 结构域中的 Y6W 突变的影响,该突变导致黄素周围氢键网络的重排和关键 Gln48 残基侧链的明显旋转。这些研究为在 X 射线自由电子激光和同步加速器上进行皮秒-毫秒时间分辨连续晶体学实验铺平了道路,以便确定早期结构中间体,并将其与经过充分研究的皮秒-毫秒光谱中间体相关联。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b201/11533990/b5d844665b8f/m-11-00991-fig1.jpg

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