Nguyen Dang T, Mai Hai V, La Han H, Nguyen Anh D, Nguyen Anh H
Faculty of Pharmacy, University of Medicine and Pharmacy at Ho Chi Minh City, 41 Dinh Tien Hoang, Ben Nghe Ward, District 1, Ho Chi Minh City, 700000, Vietnam.
J Mol Model. 2024 Oct 29;30(11):386. doi: 10.1007/s00894-024-06185-8.
The heavy metal ions are the typical carcinogenic agents. Up to now, the interaction mechanism of toxic metal ions with the biomolecules such as carbohyrate have not been elucidated and reported in the detail. In this research work, the adjacent dissociation Gibbs energy (E) of M(HO)(R-OH) complexes depended significantly on the molecular volume of primary alcohols and the inductive effects of substituent R in primary alcohols (R = CH, CHCH, CHCHCH, CHCHCHCH, Cl-CH, F-CH) as well as the length of linear cellulose. The affinity of M(HO) ions with the sixth water molecule in gas phase reduced in the order as follows: Fe > Ru > Os, which were determined by the E values and bond lengths of M-O. The water solvent made the E values of Fe(HO) ions and Fe(HO)(CHOH) ions changed completely in the case of the polarizable continuum model, while the Onsager model gave the good agreement with the gas phase model.
The nature of interaction between hydrated Fe(HO) ion and the hydroxy groups of primary alcohols were investigated using density functional theory method at the B3LYP/6-311 + G** level, the PBEPBE/6-311 + G** level. The influence of water solvent was evaluated using the Onsager model and the polarizable continuum model. The two-layer ONIOM approach and the local softness analysis were employed for the hydroxy groups of linear cellulose at the B3LYP/6-311 + G**:HF/6-31G* level. The affinity of M(HO) ions (M = Fe, Ru, and Os) with the sixth water molecule were probed at the B3LYP/QZVPP/6-311 + G** level (QZVPP basis set for the metal atoms).
重金属离子是典型的致癌物质。到目前为止,有毒金属离子与生物分子(如碳水化合物)之间的相互作用机制尚未得到详细阐明和报道。在本研究工作中,M(HO)(R-OH)配合物的相邻解离吉布斯自由能(E)显著取决于伯醇的分子体积、伯醇中取代基R的诱导效应(R = CH、CHCH、CHCHCH、CHCHCHCH、Cl-CH、F-CH)以及线性纤维素的长度。M(HO)离子与气相中第六个水分子的亲和力按以下顺序降低:Fe > Ru > Os,这由M-O的E值和键长决定。在可极化连续介质模型的情况下,水溶剂使Fe(HO)离子和Fe(HO)(CHOH)离子的E值完全改变,而Onsager模型与气相模型吻合良好。
使用密度泛函理论方法在B3LYP/6-311 + G水平、PBEPBE/6-311 + G水平研究水合Fe(HO)离子与伯醇羟基之间的相互作用性质。使用Onsager模型和可极化连续介质模型评估水溶剂的影响。在B3LYP/6-311 + G**:HF/6-31G*水平采用两层ONIOM方法和局部软度分析研究线性纤维素的羟基。在B3LYP/QZVPP/6-311 + G**水平(金属原子采用QZVPP基组)探究M(HO)离子(M = Fe、Ru和Os)与第六个水分子的亲和力。