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揭示脆性星星骨 Ophiomastix wendtii 中可变胶原组织的假定调节剂:RNA-Seq 分析。

Unveiling putative modulators of mutable collagenous tissue in the brittle star Ophiomastix wendtii: an RNA-Seq analysis.

机构信息

Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, 9331 Robert D. Snyder Rd., Charlotte, 28223, NC, USA.

Computational Intelligence to Predict Health and Environmental Risks (CIPHER) Research Center, University of North Carolina at Charlotte, 9331 Robert D. Snyder Rd., Charlotte, 28223, NC, USA.

出版信息

BMC Genomics. 2024 Oct 29;25(1):1013. doi: 10.1186/s12864-024-10926-7.

Abstract

Collagenous connective tissue, found throughout the bodies of metazoans, plays a crucial role in maintaining structural integrity. This versatile tissue has the potential for numerous biomedical applications, including the development of innovative collagen-based biomaterials. Inspiration for such advancements can be drawn from echinoderms, a group of marine invertebrates that includes sea stars, sea cucumbers, brittle stars, sea urchins, and sea lilies. Through their nervous system, these organisms can reversibly control the pliability of their connective tissue components (i.e., tendons and ligaments) that are composed of mutable collagenous tissue (MCT). The variable tensile properties of the MCT allow echinoderms to perform unique functions, including postural maintenance, reduction of muscular energy use, autotomy to avoid predators, and asexual reproduction through fission. The changes in the tensile strength of MCT structures are specifically controlled by specialized neurosecretory cells called juxtaligamental cells. These cells release substances that either soften or stiffen the MCT. So far, only a few of these substances have been purified and characterized, and the genetic underpinning of MCT biology remains unknown. Therefore, we have conducted this research to identify MCT-related genes in echinoderms as a first step towards a better understanding of the MCT molecular control mechanisms. Our ultimate goal is to unlock new biomaterial applications based on this knowledge. In this project, we used RNA-Seq to identify and annotate differentially expressed genes in the MCT structures of the brittle star Ophiomastix wendtii. As a result, we present a list of 16 putative MCT modulator genes, which will be validated and characterized in forthcoming functional analyses.

摘要

胶原结缔组织存在于后生动物的全身,对维持结构完整性起着至关重要的作用。这种多功能组织具有多种生物医学应用的潜力,包括开发创新的基于胶原蛋白的生物材料。这些进展的灵感可以来自棘皮动物,这是一组海洋无脊椎动物,包括海星、海参、海蛇尾、海胆和海百合。通过它们的神经系统,这些生物可以可逆地控制由可变形胶原组织 (MCT) 组成的结缔组织成分(即肌腱和韧带)的柔韧性。MCT 的可变拉伸特性使棘皮动物能够执行独特的功能,包括维持姿势、减少肌肉能量使用、通过自切避免被捕食者捕食,以及通过分裂进行无性繁殖。MCT 结构拉伸强度的变化是由称为韧带旁细胞的专门神经分泌细胞特异性控制的。这些细胞释放的物质会使 MCT 变软或变硬。到目前为止,只有少数这些物质已经被纯化和表征,并且 MCT 生物学的遗传基础仍然未知。因此,我们进行了这项研究,以鉴定棘皮动物中的 MCT 相关基因,作为更好地了解 MCT 分子控制机制的第一步。我们的最终目标是基于这些知识解锁新的生物材料应用。在这个项目中,我们使用 RNA-Seq 来鉴定和注释脆星蛇尾 Ophiomastix wendtii 的 MCT 结构中差异表达的基因。结果,我们提出了 16 个假定的 MCT 调节剂基因列表,这些基因将在即将进行的功能分析中进行验证和表征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2321/11520437/351afbd9e950/12864_2024_10926_Fig1_HTML.jpg

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