Choudhary Ratan Kumar, Kumar B V Sunil, Sekhar Mukhopadhyay Chandra, Kashyap Neeraj, Sharma Vishal, Singh Nisha, Salajegheh Tazerji Sina, Kalantari Roozbeh, Hajipour Pouneh, Singh Malik Yashpal
Department of Bioinformatics, Animal Stem Cells Laboratory, College of Animal Biotechnology, Guru Angad Dev Veterinary and Animal Sciences University, Ludhiana 141004, Punjab, India.
Department of Animal Biotechnology, Proteomics & Metabolomics Lab, College of Animal Biotechnology, Guru Angad Dev Veterinary and Animal Sciences University, Ludhiana 141004, Punjab, India.
Vet Med Int. 2024 Oct 24;2024:4125118. doi: 10.1155/2024/4125118. eCollection 2024.
The livestock industry faces significant challenges, with disease outbreaks being a particularly devastating issue. These diseases can disrupt the food supply chain and the livelihoods of those involved in the sector. To address this, there is a growing need to enhance the health and well-being of livestock animals, ultimately improving their performance while minimizing their environmental impact. To tackle the considerable challenge posed by disease epidemics, multiomics approaches offer an excellent opportunity for scientists, breeders, and policymakers to gain a comprehensive understanding of animal biology, pathogens, and their genetic makeup. This understanding is crucial for enhancing the health of livestock animals. Multiomic approaches, including phenomics, genomics, epigenomics, metabolomics, proteomics, transcriptomics, microbiomics, and metaproteomics, are widely employed to assess and enhance animal health. High-throughput phenotypic data collection allows for the measurement of various fitness traits, both discrete and continuous, which, when mathematically combined, define the overall health and resilience of animals, including their ability to withstand diseases. Omics methods are routinely used to identify genes involved in host-pathogen interactions, assess fitness traits, and pinpoint animals with disease resistance. Genome-wide association studies (GWAS) help identify the genetic factors associated with health status, heat stress tolerance, disease resistance, and other health-related characteristics, including the estimation of breeding value. Furthermore, the interaction between hosts and pathogens, as observed through the assessment of host gut microbiota, plays a crucial role in shaping animal health and, consequently, their performance. Integrating and analyzing various heterogeneous datasets to gain deeper insights into biological systems is a challenging task that necessitates the use of innovative tools. Initiatives like MiBiOmics, which facilitate the visualization, analysis, integration, and exploration of multiomics data, are expected to improve prediction accuracy and identify robust biomarkers linked to animal health. In this review, we discuss the details of multiomics concerning the health and well-being of livestock animals.
畜牧业面临着重大挑战,疾病爆发是一个尤其具有破坏性的问题。这些疾病会扰乱食品供应链以及该行业相关人员的生计。为应对这一问题,越来越需要提高家畜的健康水平和福祉,最终在尽量减少其环境影响的同时提高它们的生产性能。为应对疾病流行带来的巨大挑战,多组学方法为科学家、育种者和政策制定者提供了一个绝佳机会,使他们能够全面了解动物生物学、病原体及其基因构成。这种了解对于提高家畜健康至关重要。多组学方法,包括表型组学、基因组学、表观基因组学、代谢组学、蛋白质组学、转录组学、微生物组学和宏蛋白质组学,被广泛用于评估和改善动物健康。高通量表型数据收集能够测量各种适应性性状,包括离散型和连续型,这些性状经数学组合后可定义动物的整体健康状况和恢复力,包括它们抵御疾病的能力。组学方法经常用于识别参与宿主与病原体相互作用的基因、评估适应性性状以及找出具有抗病能力的动物。全基因组关联研究(GWAS)有助于识别与健康状况、耐热应激能力、抗病能力以及其他与健康相关特征(包括育种值估计)相关的遗传因素。此外,通过评估宿主肠道微生物群观察到的宿主与病原体之间的相互作用,在塑造动物健康进而影响其生产性能方面起着至关重要的作用。整合和分析各种异质数据集以更深入了解生物系统是一项具有挑战性的任务,需要使用创新工具。像MiBiOmics这样有助于多组学数据可视化、分析、整合和探索的计划,有望提高预测准确性并识别与动物健康相关的可靠生物标志物。在本综述中,我们讨论了与家畜健康和福祉相关的多组学细节。