Milenkovic Ivan, Novoa Eva Maria
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona 08003, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain.
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona 08003, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain; ICREA, Passeig Lluís Companys 23, Barcelona 08010, Spain.
Trends Cell Biol. 2024 Nov 4. doi: 10.1016/j.tcb.2024.10.001.
Ribosomal RNAs (rRNA) are the most abundant RNA molecules in almost all cell types. The general consensus in the field is that rRNA modifications are largely species-specific, with most previous works and databases solely stratifying modifications by the species of origin, without taking other levels of complexity into account. However, new evidence has emerged suggesting dynamic rRNA modifications may have additional layers of complexity and might play an important role in development and disease. In this review article, we summarize recent evidence supporting heterogeneity and dynamics in rRNA modifications in diverse biological contexts, challenging the simplistic view of 'one-species-one-rRNA-modification-pattern'. Moreover, we highlight how rRNA modification dynamics have been studied to date and how long-read sequencing methods can significantly improve our understanding of this largely unexplored yet highly abundant RNA family, across tissues, developmental stages, and diseases.
核糖体RNA(rRNA)是几乎所有细胞类型中最丰富的RNA分子。该领域的普遍共识是,rRNA修饰在很大程度上具有物种特异性,以往的大多数研究和数据库仅根据来源物种对修饰进行分类,而没有考虑其他复杂层面。然而,新出现的证据表明,动态rRNA修饰可能具有更多层次的复杂性,并且可能在发育和疾病中发挥重要作用。在这篇综述文章中,我们总结了最近支持不同生物学背景下rRNA修饰的异质性和动态性的证据,挑战了“一个物种一种rRNA修饰模式”这种简单化观点。此外,我们强调了迄今为止rRNA修饰动态性是如何被研究的,以及长读长测序方法如何能够显著提高我们对这个在很大程度上尚未被探索但却高度丰富的RNA家族在不同组织、发育阶段和疾病中的理解。