González-Ramírez Ixchel S, Escalona Merly, Miller Courtney, Chumchim Noravit, Marimuthu Mohan P A, Nguyen Oanh, Song Michael J, Mishler Brent D
Department of Integrative Biology, University of California Berkeley, Berkeley, CA, United States.
University and Jepson Herbaria, University of California Berkeley, Berkeley, CA, United States.
J Hered. 2025 Jun 2;116(3):389-396. doi: 10.1093/jhered/esae065.
Calasterella californica belongs to a monotypic genus of liverworts endemic to the west coast of North America, primarily distributed in California. This dioicous species occurs in a variety of ecosystems from deserts to redwood forests; little is known about how this species is adapted to live in those seemingly contrasting environments. In this paper, we report on the assembly of the nuclear genome of C. californica. As part of the California Conservation Genomics Project (CCGP), we used Pacific Biosciences HiFi long-read sequencing data to produce a de novo assembly that consists of 772 contigs, with a total length of 517 Mbp and a BUSCO complete score of 95%. Calasterella californica is only the sixth species of liverworts-a group with more than 7,200 described species-to have a nuclear reference genome. The availability of this reference genome will facilitate the study of the unique features of C. californica and other liverworts, pave the road towards a comparative understanding of liverwort genomes, and add an important starting point for studies of the geographic variation of this species within the CCGP project.
加州卡氏苔属于北美西海岸特有的苔类单型属,主要分布在加利福尼亚州。这种雌雄异株的物种出现在从沙漠到红杉林的各种生态系统中;对于该物种如何适应在这些看似截然不同的环境中生存,人们知之甚少。在本文中,我们报告了加州卡氏苔核基因组的组装情况。作为加利福尼亚保护基因组学项目(CCGP)的一部分,我们使用了太平洋生物科学公司的HiFi长读长测序数据来进行从头组装,得到了一个由772个重叠群组成的基因组,总长度为517兆碱基对,BUSCO完整评分95%。加州卡氏苔是苔类植物(一个有超过7200个已描述物种的类群)中第六个拥有核参考基因组的物种。这个参考基因组的可用性将有助于研究加州卡氏苔和其他苔类植物的独特特征,为比较了解苔类植物基因组铺平道路,并为CCGP项目中该物种地理变异的研究提供一个重要的起点。