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耐多药和高毒力克隆在沙特阿拉伯王国的传播。

The dissemination of multidrug-resistant and hypervirulent clones across the Kingdom of Saudi Arabia.

机构信息

Laboratory of Infectious Disease Epidemiology, KAUST Center of Excellence for Smart Health and Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia.

Ministry of Health, Riyadh, Kingdom of Saudi Arabia.

出版信息

Emerg Microbes Infect. 2024 Dec;13(1):2427793. doi: 10.1080/22221751.2024.2427793. Epub 2024 Nov 21.

Abstract

is a Gram-negative bacterium associated with a wide range of community- and hospital-acquired infections. The emergence of clonal hypervirulent strains resistant to last-resort antimicrobial agents has become a global concern. The Kingdom of Saudi Arabia (KSA), with its diverse population and high tourism traffic, serves as a platform where the spread of multidrug-resistant (MDR) strains are facilitated. However, the knowledge of epidemiology and population diversity of MDR in KSA is scarce. We conducted a comprehensive genomic survey on 352 MDR isolates systematically collected from bloodstream and urinary tract infections in 34 hospitals across 15 major cities in KSA during 2022 and 2023. Whole-genome sequencing on the isolates was performed, followed by genomic epidemiology and phylodynamic analysis. Our study revealed a dynamic population characterized by the rapid expansion of several dominant clones, including, ST2096, ST147, and ST231, which were estimated to have emerged within the past decade. These clones exhibited widespread dissemination across hospitals and were genetically linked to global strains, particularly from the Middle East and South Asia. All major clones harboured plasmid-borne ESBLs and carbapenemase genes, with plasmidome analysis identifying multiple IncH, IncA/C and IncL plasmids underlying the MDR-hypervirulent phenotype. These plasmids were shared between major clones and became acquired on the same time scales as the expansion of the dominant clones. Our results report ST2096 as an emerging MDR-hypervirulent clone, emphasizing the need for monitoring of the circulating clones and their plasmid content in the KSA and broader West Asia.

摘要

是一种与广泛的社区获得性和医院获得性感染相关的革兰氏阴性菌。具有抗最后手段抗菌药物的克隆性高毒力株的出现已成为全球关注的问题。沙特阿拉伯王国(KSA),其人口多样化且旅游业发达,是促进多药耐药(MDR)菌株传播的平台。然而,关于 KSA 中 MDR 的流行病学和人群多样性的知识却很少。我们对 2022 年至 2023 年期间从 KSA 15 个主要城市的 34 家医院的血流感染和尿路感染中系统收集的 352 株 MDR 分离株进行了全面的基因组调查。对分离株进行了全基因组测序,并进行了基因组流行病学和系统发育分析。我们的研究揭示了一个动态的人群,其特征是几个主要克隆的快速扩张,包括 ST2096、ST147 和 ST231,据估计这些克隆在过去十年中出现。这些克隆在医院之间广泛传播,并与来自中东和南亚的全球菌株在遗传上有关联。所有主要克隆都携带质粒介导的 ESBL 和碳青霉烯酶基因,质粒组分析确定了多个 IncH、IncA/C 和 IncL 质粒,这些质粒是 MDR-高毒力表型的基础。这些质粒在主要克隆之间共享,并在主要克隆扩张的同时获得。我们的研究结果报告 ST2096 是一种新兴的 MDR-高毒力克隆,强调需要监测 KSA 和更广泛的西亚的循环克隆及其质粒含量。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e43/11583321/85155822e65f/TEMI_A_2427793_F0001_OC.jpg

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