天然大鼠内髓集合管对表皮生长因子的磷酸化蛋白质组学反应
Phosphoproteomic response to epidermal growth factor in native rat inner medullary collecting duct.
作者信息
Chou Chung-Lin, Jayatissa Nipun U, Kichula Elena T, Ou Shuo-Ming, Limbutara Kavee, Knepper Mark A
机构信息
Epithelial Systems Biology Laboratory, Systems Biology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland, United States.
出版信息
Am J Physiol Renal Physiol. 2025 Jan 1;328(1):F29-F47. doi: 10.1152/ajprenal.00182.2024. Epub 2024 Nov 7.
Epidermal growth factor (EGF) has important effects in the renal collecting duct to regulate salt and water transport. To identify elements of EGF-mediated signaling in the rat renal inner medullary collecting duct (IMCD), we carried out phosphoproteomic analysis. Biochemically isolated rat IMCD suspensions were treated with 1 µM of EGF or vehicle for 30 min. We performed comprehensive quantitative phosphoproteomics using tandem mass tag (TMT)-labeling of tryptic peptides followed by protein mass spectrometry. We present a data resource reporting all detected phosphorylation sites and their changes in response to EGF. For a total of 29,881 unique phosphorylation sites, 135 sites were increased and 119 sites were decreased based on stringent statistical analysis. The data are provided to users at https://esbl.nhlbi.nih.gov/Databases/EGF-phospho/. The analysis demonstrated that EGF signals through canonical EGF pathways in the renal IMCD. Analysis of Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways in which EGF-regulated phosphoproteins are over-represented in native rat IMCD cells confirmed mapping to RAF-MEK-extracellular signal-regulated kinase (ERK) signaling but also pointed to a role for EGF in the regulation of protein translation. A large number of phosphoproteins regulated by EGF contained PDZ domains that are key elements of epithelial polarity determination. We also provide a collecting duct EGF-network map as a user-accessible web resource at https://esbl.nhlbi.nih.gov/Databases/EGF-network/. Overall, the phosphoproteomic data presented provide a useful resource for experimental design and modeling of signaling in the renal collecting duct. EGF negatively regulates transepithelial water and salt transport across the kidney collecting duct. This study identified phosphoproteins affected by EGF stimulation in normal rat collecting ducts, providing insights into global cell signaling mechanisms. Bioinformatic analyses highlighted enhanced canonical ERK signaling alongside a diminished activity in the PI3K-Akt pathway, which is crucial for cell proliferation and survival. This EGF response differs somewhat from prior studies where both pathways were prominently activated.
表皮生长因子(EGF)在肾集合管中对调节盐和水的转运具有重要作用。为了确定大鼠肾内髓集合管(IMCD)中EGF介导的信号传导元件,我们进行了磷酸化蛋白质组分析。将生物化学分离的大鼠IMCD悬浮液用1μM的EGF或溶剂处理30分钟。我们使用串联质谱标签(TMT)标记胰蛋白酶肽,然后进行蛋白质质谱分析,进行了全面的定量磷酸化蛋白质组学研究。我们提供了一个数据资源,报告了所有检测到的磷酸化位点及其对EGF的响应变化。基于严格的统计分析,在总共29,881个独特的磷酸化位点中,有135个位点增加,119个位点减少。数据可在https://esbl.nhlbi.nih.gov/Databases/EGF-phospho/上提供给用户。分析表明,EGF通过肾IMCD中的经典EGF途径发出信号。对京都基因与基因组百科全书(KEGG)途径的分析表明,在天然大鼠IMCD细胞中,EGF调节的磷酸化蛋白质过度表达,证实其与RAF-MEK-细胞外信号调节激酶(ERK)信号传导相关,但也表明EGF在蛋白质翻译调节中发挥作用。大量受EGF调节的磷酸化蛋白质含有PDZ结构域,这些结构域是上皮极性确定的关键元件。我们还在https://esbl.nhlbi.nih.gov/Databases/EGF-network/上提供了一个集合管EGF网络图,作为用户可访问的网络资源。总体而言,所呈现的磷酸化蛋白质组数据为肾集合管中信号传导的实验设计和建模提供了有用的资源。EGF负向调节跨肾集合管的上皮细胞水和盐转运。本研究确定了正常大鼠集合管中受EGF刺激影响的磷酸化蛋白质,为整体细胞信号传导机制提供了见解。生物信息学分析突出了经典ERK信号传导增强,同时PI3K-Akt途径的活性降低,而PI3K-Akt途径对细胞增殖和存活至关重要。这种EGF反应与先前两条途径均显著激活的研究有所不同。