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两株来源于白蚁巢穴的韦氏芽孢杆菌的全基因组测序和特征分析及生物合成基因簇的综合比较基因组分析。

Whole-Genome Sequencing And Characterization Of Two Bacillus velezensis Strains from Termitarium and A Comprehensive Comparative Genomic Analysis of Biosynthetic Gene Clusters.

机构信息

Department of Genetics, School of Biological Sciences, Madurai Kamaraj University, Madurai, 625021, India.

出版信息

Curr Microbiol. 2024 Nov 7;81(12):449. doi: 10.1007/s00284-024-03965-6.

Abstract

The species Bacillus velezensis is known for its biosynthetic potential and metabolic versatility in producing several secondary metabolites and promoting plant growth. In this study, we isolated two B. velezensis strains, WGTg-8 and WGTm-299, from the termite gut and termitarium, which exhibited antimicrobial activity against multiple clinical and phytopathogens. The whole genomes of these strains were sequenced using the Illumina platform and annotated. The genome mining of the draft genome sequences revealed 48 biological gene clusters (BGCs) responsible for synthesizing various secondary metabolites. The construction of the similarity network of the BGCs and the comparative analysis with the genetically related organisms are aided in the identification of metabolites produced by these strains. We identified biosynthetic gene clusters (BGCs) coding for macrolactin H, bacilysin, bacillibactin, amylocyclin, comX4, and LCI, found in both strains with 100% similarity. The difficidin, bacillaene, thusin_alpha, and cericidin BGCs are exclusively found in strain WGTg-8, while the colicin BGC is exclusively present in the WGTm-299 strain. The fengycin and surfactin gene clusters are present in both strains with 80% similarity. Furthermore, 28 putative NRPS BGCs, NRPS-T1PKS hybrid clusters, a T1PKS, and a bacteriocin BGC were identified with very low similarity (≤ 25%) or no similarity with known antibiotics. In addition, we found several genes coding for plant growth-promoting properties, including nitrogen metabolism, hormone synthesis, sulfur metabolism, phosphate metabolism, and a few other properties.

摘要

物种枯草芽孢杆菌以其生物合成潜力和代谢多功能性而闻名,能够产生多种次级代谢产物并促进植物生长。在这项研究中,我们从白蚁肠道和白蚁巢中分离出了两株枯草芽孢杆菌菌株 WGTg-8 和 WGTm-299,它们对多种临床和植物病原菌具有抗菌活性。这两株菌的全基因组使用 Illumina 平台进行了测序和注释。对这些菌株的草图基因组序列进行的基因组挖掘揭示了 48 个负责合成各种次级代谢产物的生物基因簇(BGCs)。BGC 相似性网络的构建和与遗传相关生物体的比较分析有助于鉴定这些菌株产生的代谢产物。我们鉴定了生物合成基因簇(BGCs),这些 BGCs 编码了大环内酯 H、杆菌肽、杆菌素、淀粉环素、comX4 和 LCI,在这两株菌中都有 100%的相似度。 difficidin、bacillaene、thusin_alpha 和 cericidin BGC 仅在 WGTg-8 菌株中发现,而 colicin BGC 仅在 WGTm-299 菌株中发现。fengycin 和 surfactin 基因簇在这两株菌中相似度为 80%。此外,还鉴定了 28 个假定的 NRPS BGCs、NRPS-T1PKS 杂合簇、一个 T1PKS 和一个细菌素 BGC,它们与已知抗生素的相似度非常低(≤25%)或没有相似性。此外,我们还发现了一些编码植物生长促进特性的基因,包括氮代谢、激素合成、硫代谢、磷代谢和其他一些特性。

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