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橙翅粉蝶(Mell,1913年)(昆虫纲:鳞翅目:粉蝶科:黄粉蝶亚科)线粒体全基因组的系统发育分析

Phylogenetic analysis of the complete mitochondrial genome of the orange-winged sulphur butterfly Mell 1913 (Insecta: Lepidoptera: Pieridae: Coliadinae).

作者信息

Agcaoili Arlene M, Ameena Nabiha, Andres Dexter, Caners Rhey, Chahal Manishvinder K, Croitor Nicole J, David Gabrielle M, Enns Kaesy L, Fedorova Oleksandra, Garber Hannah A, Gregoire Sarah D, Ilnisky Tenley E, Jiang Annie, Kozak Anthony, Ladha Feryal, Martin Alexandria, McAuley Mary A, McEachern Liam R, McNeill Cassidy, Nanayakkara Senudi D, Nguyen Ngoc Thao Vy, Park Gaeun, Peters Deanna K, Poitras Madison N, Potts Jolene, Prajapati Dhruvi V, Prefontaine Camille D, Rajapaksha Ravindu V, Singhal Pratyaksh, Souriyavong Cedey, Stoker Colby, Talabis Kayla R, Tan Yantong, Tang Jasmin L, Tkach Kailey W, Tohms Ashley J, Tramley Cameron G, Treftlin Josh, Ukani Diya, Vallelly Ethan A, Wiens Patrick V, Yee Carissa, Yu Ke, Marcus Jeffrey M

机构信息

Department of Biological Sciences, University of Manitoba, Winnipeg, Canada.

出版信息

Mitochondrial DNA B Resour. 2024 Nov 13;9(11):1510-1517. doi: 10.1080/23802359.2024.2427109. eCollection 2024.

Abstract

Mell 1913 (Pieridae) is a little-studied butterfly species endemic to China that flies primarily in the forest canopy. Genome skimming by Illumina sequencing allowed assembly of 146,702 reads for complete 1471.3-fold mean coverage of the circular 15,264 bp mitogenome from consisting of 82.1% AT nucleotides. A gene order typical of butterflies was recovered consisting of 13 protein-coding genes, 22 tRNAs, two rRNAs, and a predicted control region. The open reading frame begins with atypical start codon CGA. Six protein-coding genes (, , , , , ) with single-nucleotide (T) stop codons, and two protein-coding genes (, ) with two-nucleotide (TA) stop codons encoded in the DNA were inferred to be completed by adenine nucleotides from the Poly-A tail of the mRNA. Bayesian's phylogenetic reconstruction places the and mitogenomes as sister clades. mitogenomes were sister to those from genus in the monophyletic subfamily Coliadinae. The mitogenome phylogeny is consistent with previous molecular phylogenetic hypotheses based on other markers, but differs somewhat from a morphology-based hypothesis that suggested that was more closely related to genus . This may falsify the hypothesis or may instead reflect mitochondrial-nuclear phylogenetic discordance.

摘要

美凤蝶1913(粉蝶科)是一种在中国特有的研究较少的蝴蝶物种,主要在树冠层飞行。通过Illumina测序进行基因组浅层测序,共组装了146,702条reads,对来自15,264 bp环状线粒体基因组进行了1471.3倍的平均覆盖,该基因组由82.1%的AT核苷酸组成。恢复了一个典型的蝴蝶基因排列顺序,包括13个蛋白质编码基因、22个tRNA、2个rRNA和一个预测的控制区。开放阅读框以非典型起始密码子CGA开始。推断6个具有单核苷酸(T)终止密码子的蛋白质编码基因(,,,,,)和2个在DNA中编码的具有双核苷酸(TA)终止密码子的蛋白质编码基因(,)通过mRNA的Poly-A尾的腺嘌呤核苷酸来完成。贝叶斯系统发育重建将美凤蝶和玉斑凤蝶的线粒体基因组作为姐妹进化枝。在单系亚科黄粉蝶亚科中,美凤蝶线粒体基因组与来自属的线粒体基因组是姐妹关系。线粒体基因组系统发育与基于其他标记的先前分子系统发育假设一致,但与基于形态学的假设略有不同,该假设认为美凤蝶与属的关系更密切。这可能会证伪该假设,或者可能反而反映了线粒体-核基因系统发育不一致。

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