CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi, 110025, India.
Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
Fam Cancer. 2024 Nov 15;24(1):4. doi: 10.1007/s10689-024-00429-5.
As genetic testing becomes increasingly accessible and affordable, the uniform and accurate interpretation of genetic variants becomes essential. The ACMG/AMP joint guidelines provide the basis for systematic and uniform interpretation of pathogenicity of genetic variants. However, the application of these in routine clinical interpretation at-scale has largely been limited by the lack of resources providing harmonized data especially at a population-scale. Here we describe BRCAIndica, a resource for BRCA1 and BRCA2 variants conforming to the ACMG & AMP joint guidelines to aid uniform clinical interpretation of genetic tests with a specific focus on variants reported in the Indian population. We collected and harmonized variants from across several resources including population-scale datasets, literature survey and other variant datasets. We then classified them according to the ACMG/AMP guidelines.We have collected a total of 10,490 unique variants, of which 2261 Pathogenic and 43 Likely Pathogenic variants belong to BRCA1 and 2694 Pathogenic and 20 Likely Pathogenic variants to BRCA2 respectively. BRCAIndica can be accessed at:https://clingen.igib.res.in/brcaindica/ . In conclusion, BRCAIndica is a powerful resource that offers researchers and clinicians with ACMG/AMP annotated BRCA variants.
随着基因检测变得越来越普及和经济实惠,对遗传变异进行统一和准确的解读变得至关重要。ACMG/AMP 联合指南为遗传变异致病性的系统和统一解读提供了基础。然而,由于缺乏提供协调数据的资源,尤其是在人群规模上,这些指南在大规模常规临床解读中的应用在很大程度上受到限制。在这里,我们描述了 BRCAIndica,这是一个符合 ACMG 和 AMP 联合指南的 BRCA1 和 BRCA2 变异资源,旨在帮助对基因检测进行统一的临床解读,特别关注在印度人群中报告的变异。我们从多个资源中收集和协调了变异,包括人群规模数据集、文献调查和其他变异数据集。然后,我们根据 ACMG/AMP 指南对它们进行了分类。我们总共收集了 10490 个独特的变异,其中 2261 个致病性和 43 个可能致病性变异属于 BRCA1,2694 个致病性和 20 个可能致病性变异属于 BRCA2。BRCAIndica 可在以下网址访问:https://clingen.igib.res.in/brcaindica/ 。总之,BRCAIndica 是一个强大的资源,为研究人员和临床医生提供了 ACMG/AMP 注释的 BRCA 变异。